Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:94966588-95246942

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Sgca 11 94962791 to 94976327 13536 - protein coding gene sarcoglycan, alpha (dystrophin-associated glycoprotein)
Tssr104316 11 94967589 to 94967612 23 + TSS region transcription start site region 104316
Hils1 11 94967593 to 94968456 863 + protein coding gene histone H1-like protein in spermatids 1
Tssr104317 11 94967622 to 94967639 17 + TSS region transcription start site region 104317
Tssr110231 11 94972048 to 94972055 7 - TSS region transcription start site region 110231
Tssr110232 11 94973447 to 94973471 24 - TSS region transcription start site region 110232
Tssr110233 11 94976177 to 94976179 2 - TSS region transcription start site region 110233
Tssr110234 11 94976332 to 94976339 7 - TSS region transcription start site region 110234
Tssr110235 11 94976348 to 94976359 11 - TSS region transcription start site region 110235
Tssr110236 11 94976368 to 94976399 31 - TSS region transcription start site region 110236
Tssr110237 11 94976402 to 94976423 21 - TSS region transcription start site region 110237
Cpgi3568 11 94978940 to 94979328 388 CpG island CpG island 3568
Cpgi3569 11 94990698 to 94993118 2420 CpG island CpG island 3569
Tssr104318 11 94990759 to 94990797 38 + TSS region transcription start site region 104318
Tssr104319 11 94990924 to 94990970 46 + TSS region transcription start site region 104319
Tssr104320 11 94990971 to 94990995 24 + TSS region transcription start site region 104320
Tssr104321 11 94990996 to 94991012 16 + TSS region transcription start site region 104321
Tssr3648 11 94991042 to 94991090 48 + TSS region transcription start site region 3648
Tssr3649 11 94991171 to 94991172 1 - TSS region transcription start site region 3649
Tssr3650 11 94991185 to 94991219 34 + TSS region transcription start site region 3650
Ppp1r9b 11 94991212 to 95006898 15686 + protein coding gene protein phosphatase 1, regulatory subunit 9B
Tssr104322 11 94991374 to 94991388 14 + TSS region transcription start site region 104322
Tssr104323 11 94993574 to 94993592 18 + TSS region transcription start site region 104323
Tssr3651 11 94997860 to 94997879 19 + TSS region transcription start site region 3651
Tssr104324 11 94997899 to 94997924 25 + TSS region transcription start site region 104324
Cpgi3570 11 94998049 to 94998228 179 CpG island CpG island 3570
Tssr104325 11 95006323 to 95006335 12 + TSS region transcription start site region 104325
Tssr104326 11 95006350 to 95006369 19 + TSS region transcription start site region 104326
Tssr104327 11 95006432 to 95006457 25 + TSS region transcription start site region 104327
Cpgi3571 11 95009606 to 95010661 1055 CpG island CpG island 3571
Tssr104328 11 95009764 to 95009782 18 + TSS region transcription start site region 104328
Tssr104329 11 95009852 to 95009890 38 + TSS region transcription start site region 104329
Samd14 11 95009879 to 95026087 16208 + protein coding gene sterile alpha motif domain containing 14
Tssr104330 11 95009898 to 95009919 21 + TSS region transcription start site region 104330
Tssr104331 11 95009936 to 95009947 11 + TSS region transcription start site region 104331
Tssr104332 11 95009960 to 95009963 3 + TSS region transcription start site region 104332
Tssr104333 11 95009966 to 95010029 63 + TSS region transcription start site region 104333
Tssr104334 11 95010075 to 95010086 11 + TSS region transcription start site region 104334
Tssr104335 11 95010100 to 95010115 15 + TSS region transcription start site region 104335
Tssr104336 11 95010176 to 95010185 9 + TSS region transcription start site region 104336
Tssr104337 11 95010244 to 95010276 32 + TSS region transcription start site region 104337
Tssr104338 11 95010277 to 95010293 16 + TSS region transcription start site region 104338
Tssr110238 11 95010293 to 95010325 32 - TSS region transcription start site region 110238
Tssr104339 11 95010297 to 95010365 68 + TSS region transcription start site region 104339
Tssr104340 11 95010366 to 95010379 13 + TSS region transcription start site region 104340
Tssr104341 11 95010384 to 95010419 35 + TSS region transcription start site region 104341
Tssr104342 11 95010472 to 95010483 11 + TSS region transcription start site region 104342
Tssr110239 11 95012192 to 95012207 15 - TSS region transcription start site region 110239
Cpgi3572 11 95019844 to 95020346 502 CpG island CpG island 3572
Cpgi3573 11 95024596 to 95024820 224 CpG island CpG island 3573
Pdk2 11 95026258 to 95041354 15096 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 2
Tssr110240 11 95026699 to 95026714 15 - TSS region transcription start site region 110240
Tssr110241 11 95028742 to 95028770 28 - TSS region transcription start site region 110241
Gm11513 11 95032759 to 95038283 5524 + antisense lncRNA gene predicted gene 11513
Tssr110242 11 95032988 to 95032993 5 - TSS region transcription start site region 110242
Tssr110243 11 95040506 to 95040543 37 - TSS region transcription start site region 110243
Tssr110244 11 95040548 to 95040565 17 - TSS region transcription start site region 110244
Tssr110245 11 95040579 to 95040610 31 - TSS region transcription start site region 110245
Cpgi3574 11 95040640 to 95041710 1070 CpG island CpG island 3574
Tssr104343 11 95040722 to 95040735 13 + TSS region transcription start site region 104343
Tssr110246 11 95041266 to 95041271 5 - TSS region transcription start site region 110246
Tssr110247 11 95041276 to 95041297 21 - TSS region transcription start site region 110247
Tssr110248 11 95041308 to 95041330 22 - TSS region transcription start site region 110248
Tssr110249 11 95041335 to 95041374 39 - TSS region transcription start site region 110249
Tssr110250 11 95041391 to 95041407 16 - TSS region transcription start site region 110250
Itga3 11 95044474 to 95076801 32327 - protein coding gene integrin alpha 3
D11Lis2 11 95052290 to 95052442 152 DNA segment DNA segment, Chr 11, Lisse 2
Tssr104344 11 95057084 to 95057094 10 + TSS region transcription start site region 104344
Tssr104345 11 95057099 to 95057119 20 + TSS region transcription start site region 104345
Tssr110251 11 95060931 to 95060962 31 - TSS region transcription start site region 110251
Tssr110252 11 95065906 to 95065918 12 - TSS region transcription start site region 110252
Tssr110253 11 95065937 to 95065962 25 - TSS region transcription start site region 110253
Cpgi3575 11 95075839 to 95077285 1446 CpG island CpG island 3575
Tssr110254 11 95076566 to 95076589 23 - TSS region transcription start site region 110254
Tssr3652 11 95076592 to 95076616 24 - TSS region transcription start site region 3652
Tssr110255 11 95076643 to 95076655 12 - TSS region transcription start site region 110255
Tssr110256 11 95076657 to 95076722 65 - TSS region transcription start site region 110256
Tssr110257 11 95076803 to 95076818 15 - TSS region transcription start site region 110257
Tssr104346 11 95076945 to 95076951 6 + TSS region transcription start site region 104346
Tssr110258 11 95080926 to 95080940 14 - TSS region transcription start site region 110258
Tssr110259 11 95088850 to 95088888 38 - TSS region transcription start site region 110259
Tssr104347 11 95097226 to 95097268 42 + TSS region transcription start site region 104347
Cpgi3576 11 95105628 to 95105801 173 CpG island CpG island 3576
Cpgi3577 11 95106588 to 95106942 354 CpG island CpG island 3577
Cpgi3578 11 95118220 to 95118456 236 CpG island CpG island 3578
Cpgi3579 11 95119808 to 95122141 2333 CpG island CpG island 3579
Tssr104348 11 95119820 to 95119833 13 + TSS region transcription start site region 104348
Tssr104349 11 95120110 to 95120125 15 + TSS region transcription start site region 104349
Dlx3 11 95120117 to 95125293 5176 + protein coding gene distal-less homeobox 3
Tssr104350 11 95124987 to 95124992 5 + TSS region transcription start site region 104350
Gm38659 11 95136248 to 95140139 3891 - lncRNA gene predicted gene, 38659
Dlx4 11 95140447 to 95145801 5354 - protein coding gene distal-less homeobox 4
Cpgi3580 11 95142881 to 95143496 615 CpG island CpG island 3580
Cpgi3581 11 95145034 to 95146460 1426 CpG island CpG island 3581
Dlx4os 11 95145053 to 95159047 13994 + antisense lncRNA gene distal-less homeobox 4, opposite strand
Tssr104351 11 95145094 to 95145114 20 + TSS region transcription start site region 104351
Cpgi3582 11 95150467 to 95151114 647 CpG island CpG island 3582
Gm11514 11 95176813 to 95177244 431 + pseudogene predicted gene 11514
Cpgi3583 11 95201894 to 95202653 759 CpG island CpG island 3583
Cpgi3584 11 95210723 to 95210959 236 CpG island CpG island 3584
Cpgi3585 11 95223276 to 95223908 632 CpG island CpG island 3585
Gm11515 11 95223290 to 95225632 2342 - lincRNA gene predicted gene 11515
Tssr110260 11 95225535 to 95225541 6 - TSS region transcription start site region 110260
Tssr110261 11 95225631 to 95225634 3 - TSS region transcription start site region 110261
Cpgi3586 11 95231993 to 95232187 194 CpG island CpG island 3586