Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:94580911-94940917

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsf2 11 94557102 to 94601871 44769 - protein coding gene acyl-CoA synthetase family member 2
Cpgi3559 11 94601340 to 94602217 877 CpG island CpG island 3559
Tssr110202 11 94601796 to 94601822 26 - TSS region transcription start site region 110202
Tssr110203 11 94601825 to 94601851 26 - TSS region transcription start site region 110203
Tssr110204 11 94601862 to 94601873 11 - TSS region transcription start site region 110204
Tssr110205 11 94601883 to 94601895 12 - TSS region transcription start site region 110205
Tssr110206 11 94601965 to 94601983 18 - TSS region transcription start site region 110206
Gm11540 11 94607402 to 94609036 1634 + pseudogene predicted gene 11540
Cpgi3560 11 94629550 to 94630383 833 CpG island CpG island 3560
Tssr104212 11 94629741 to 94629834 93 + TSS region transcription start site region 104212
Lrrc59 11 94629824 to 94645216 15392 + protein coding gene leucine rich repeat containing 59
Tssr104213 11 94638843 to 94638865 22 + TSS region transcription start site region 104213
Tssr104214 11 94641310 to 94641328 18 + TSS region transcription start site region 104214
Tssr104215 11 94644132 to 94644166 34 + TSS region transcription start site region 104215
Tssr104216 11 94644370 to 94644386 16 + TSS region transcription start site region 104216
Tssr104217 11 94644395 to 94644410 15 + TSS region transcription start site region 104217
Tssr104218 11 94644645 to 94644669 24 + TSS region transcription start site region 104218
Tssr104219 11 94644887 to 94644950 63 + TSS region transcription start site region 104219
Eme1 11 94644998 to 94653785 8787 - protein coding gene essential meiotic structure-specific endonuclease 1
Tssr104220 11 94645270 to 94645272 2 + TSS region transcription start site region 104220
Cpgi3561 11 94653659 to 94654089 430 CpG island CpG island 3561
Tssr110207 11 94653687 to 94653707 20 - TSS region transcription start site region 110207
Tssr110208 11 94653714 to 94653761 47 - TSS region transcription start site region 110208
Mrpl27 11 94653767 to 94660089 6322 + protein coding gene mitochondrial ribosomal protein L27
Tssr110209 11 94653922 to 94653942 20 - TSS region transcription start site region 110209
Tssr104221 11 94654004 to 94654027 23 + TSS region transcription start site region 104221
Tssr104222 11 94654032 to 94654053 21 + TSS region transcription start site region 104222
Xylt2 11 94663851 to 94677515 13664 - protein coding gene xylosyltransferase II
Cpgi3562 11 94676500 to 94677889 1389 CpG island CpG island 3562
Tssr3645 11 94677357 to 94677379 22 - TSS region transcription start site region 3645
Tssr110210 11 94677404 to 94677496 92 - TSS region transcription start site region 110210
Gm11542 11 94677565 to 94687664 10099 + unclassified non-coding RNA gene predicted gene 11542
Tssr104223 11 94677578 to 94677632 54 + TSS region transcription start site region 104223
Tssr104224 11 94681810 to 94681815 5 + TSS region transcription start site region 104224
Tssr110211 11 94692544 to 94692576 32 - TSS region transcription start site region 110211
Gm11541 11 94694498 to 94704499 10001 - protein coding gene predicted gene 11541
Cpgi3563 11 94701422 to 94701651 229 CpG island CpG island 3563
Cpgi3564 11 94741837 to 94742681 844 CpG island CpG island 3564
Cdc34b 11 94741837 to 94743014 1177 + protein coding gene cell division cycle 34B
Tssr104225 11 94742116 to 94742145 29 + TSS region transcription start site region 104225
Gm11545 11 94756976 to 94757763 787 - pseudogene predicted gene 11545
Tssr110212 11 94760911 to 94760917 6 - TSS region transcription start site region 110212
Tssr110213 11 94760935 to 94760959 24 - TSS region transcription start site region 110213
Tssr110214 11 94761179 to 94761183 4 - TSS region transcription start site region 110214
Tmem92 11 94777217 to 94782703 5486 - protein coding gene transmembrane protein 92
Tssr110215 11 94782700 to 94782705 5 - TSS region transcription start site region 110215
Gm11546 11 94797049 to 94797777 728 - pseudogene predicted gene 11546
AA623943 11 94812619 to 94813348 729 - pseudogene expressed sequence AA623943
Gm11543 11 94828186 to 94828930 744 - pseudogene predicted gene 11543
Tssr110216 11 94831999 to 94832004 5 - TSS region transcription start site region 110216
Gm11544 11 94845358 to 94846092 734 - pseudogene predicted gene 11544
A430060F13Rik 11 94861018 to 94861759 741 - pseudogene RIKEN cDNA A430060F13 gene
Cpgi3565 11 94872895 to 94873280 385 CpG island CpG island 3565
Moe1 11 94880152 to 94880273 121 QTL modifier of epilepsy 1
D11Dcr18 11 94880152 to 94880279 127 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 18
D11Mit289 11 94880152 to 94880273 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 289
Gm22456 11 94919709 to 94919833 124 + snRNA gene predicted gene, 22456
Gm46293 11 94928561 to 94934616 6055 - lncRNA gene predicted gene, 46293
Cpgi3566 11 94936070 to 94936346 276 CpG island CpG island 3566
Col1a1 11 94936224 to 94953042 16818 + protein coding gene collagen, type I, alpha 1
Tssr104226 11 94936246 to 94936260 14 + TSS region transcription start site region 104226
Tssr104227 11 94937582 to 94937603 21 + TSS region transcription start site region 104227
Tssr104228 11 94937903 to 94937946 43 + TSS region transcription start site region 104228
Tssr104229 11 94937952 to 94938055 103 + TSS region transcription start site region 104229
Cpgi3567 11 94937960 to 94938146 186 CpG island CpG island 3567
Tssr110217 11 94937977 to 94937988 11 - TSS region transcription start site region 110217
Tssr110218 11 94938030 to 94938093 63 - TSS region transcription start site region 110218
Tssr104230 11 94938064 to 94938078 14 + TSS region transcription start site region 104230
Tssr110219 11 94938249 to 94938260 11 - TSS region transcription start site region 110219
Tssr104231 11 94938499 to 94938538 39 + TSS region transcription start site region 104231
Tssr104232 11 94938565 to 94938587 22 + TSS region transcription start site region 104232
Tssr3646 11 94939102 to 94939127 25 + TSS region transcription start site region 3646
Tssr104233 11 94939383 to 94939430 47 + TSS region transcription start site region 104233
Tssr104234 11 94939692 to 94939718 26 + TSS region transcription start site region 104234
Tssr104235 11 94939900 to 94939928 28 + TSS region transcription start site region 104235