Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:93828023-94108053

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Mit358 11 93832517 to 93832665 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 358
Utp18 11 93859243 to 93885766 26523 - protein coding gene UTP18 small subunit processome component
Tssr110105 11 93859730 to 93859735 5 - TSS region transcription start site region 110105
Tssr110106 11 93884262 to 93884265 3 - TSS region transcription start site region 110106
Cpgi3539 11 93884822 to 93886573 1751 CpG island CpG island 3539
Tssr104149 11 93885102 to 93885141 39 + TSS region transcription start site region 104149
Tssr104150 11 93885271 to 93885289 18 + TSS region transcription start site region 104150
Tssr110107 11 93885660 to 93885719 59 - TSS region transcription start site region 110107
Tssr110108 11 93885724 to 93885741 17 - TSS region transcription start site region 110108
Tssr110109 11 93885752 to 93885773 21 - TSS region transcription start site region 110109
Tssr3641 11 93885824 to 93885877 53 + TSS region transcription start site region 3641
Mbtd1 11 93885852 to 93946985 61133 + protein coding gene mbt domain containing 1
Tssr104151 11 93885884 to 93885924 40 + TSS region transcription start site region 104151
Tssr110110 11 93886091 to 93886140 49 - TSS region transcription start site region 110110
Tssr104152 11 93886137 to 93886154 17 + TSS region transcription start site region 104152
Tssr104153 11 93886157 to 93886210 53 + TSS region transcription start site region 104153
Tssr104154 11 93886229 to 93886234 5 + TSS region transcription start site region 104154
Tssr104155 11 93886245 to 93886259 14 + TSS region transcription start site region 104155
Tssr110111 11 93886502 to 93886512 10 - TSS region transcription start site region 110111
Tssr104156 11 93898621 to 93898624 3 + TSS region transcription start site region 104156
Tssr104157 11 93924482 to 93924499 17 + TSS region transcription start site region 104157
D11Mit1002 11 93931330 to 93931454 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1002
Nme2 11 93949814 to 93956256 6442 - protein coding gene NME/NM23 nucleoside diphosphate kinase 2
Gm20390 11 93949819 to 93968293 18474 - protein coding gene predicted gene 20390
Cpgi3540 11 93955182 to 93956133 951 CpG island CpG island 3540
Tssr104158 11 93955316 to 93955328 12 + TSS region transcription start site region 104158
Tssr110112 11 93955628 to 93955707 79 - TSS region transcription start site region 110112
Tssr110113 11 93955718 to 93955729 11 - TSS region transcription start site region 110113
Tssr110114 11 93955873 to 93955888 15 - TSS region transcription start site region 110114
Tssr110115 11 93955900 to 93955930 30 - TSS region transcription start site region 110115
Tssr110116 11 93955933 to 93955944 11 - TSS region transcription start site region 110116
Tssr110117 11 93955999 to 93956006 7 - TSS region transcription start site region 110117
Nme1 11 93958925 to 93968521 9596 - protein coding gene NME/NM23 nucleoside diphosphate kinase 1
Tssr110118 11 93965932 to 93965956 24 - TSS region transcription start site region 110118
Tssr110119 11 93965957 to 93965966 9 - TSS region transcription start site region 110119
Cpgi3541 11 93967867 to 93968574 707 CpG island CpG island 3541
Tssr110120 11 93968023 to 93968053 30 - TSS region transcription start site region 110120
Tssr110121 11 93968242 to 93968281 39 - TSS region transcription start site region 110121
Tssr110122 11 93968297 to 93968308 11 - TSS region transcription start site region 110122
Gm35198 11 93968601 to 93982695 14094 + lncRNA gene predicted gene, 35198
Tssr110123 11 93988834 to 93988843 9 - TSS region transcription start site region 110123
Tssr110124 11 93995185 to 93995196 11 - TSS region transcription start site region 110124
Tssr104159 11 93995360 to 93995384 24 + TSS region transcription start site region 104159
Tssr104160 11 93995400 to 93995414 14 + TSS region transcription start site region 104160
Cpgi3542 11 93995593 to 93997030 1437 CpG island CpG island 3542
Tssr110125 11 93995781 to 93995814 33 - TSS region transcription start site region 110125
Tssr3642 11 93995820 to 93995853 33 - TSS region transcription start site region 3642
Tssr104161 11 93996057 to 93996066 9 + TSS region transcription start site region 104161
Tssr104162 11 93996082 to 93996099 17 + TSS region transcription start site region 104162
Spag9 11 93996091 to 94126085 129994 + protein coding gene sperm associated antigen 9
Tssr110126 11 93996750 to 93996763 13 - TSS region transcription start site region 110126
Tssr110127 11 93996766 to 93996790 24 - TSS region transcription start site region 110127
Tssr110128 11 93996825 to 93996835 10 - TSS region transcription start site region 110128
Tssr110129 11 93997234 to 93997238 4 - TSS region transcription start site region 110129
Gm11518 11 94037218 to 94037628 410 - pseudogene predicted gene 11518
Tssr104163 11 94044100 to 94044105 5 + TSS region transcription start site region 104163
Tssr104164 11 94044111 to 94044121 10 + TSS region transcription start site region 104164
Tssr104165 11 94044124 to 94044136 12 + TSS region transcription start site region 104165
Tssr104166 11 94044142 to 94044156 14 + TSS region transcription start site region 104166
Tssr104167 11 94044194 to 94044238 44 + TSS region transcription start site region 104167
Tssr104168 11 94044241 to 94044273 32 + TSS region transcription start site region 104168
Tssr104169 11 94044289 to 94044296 7 + TSS region transcription start site region 104169
Tssr104170 11 94044324 to 94044329 5 + TSS region transcription start site region 104170
Tssr104171 11 94044331 to 94044342 11 + TSS region transcription start site region 104171
Tssr110130 11 94052455 to 94052460 5 - TSS region transcription start site region 110130
Tssr110131 11 94053537 to 94053551 14 - TSS region transcription start site region 110131
Tssr110132 11 94053557 to 94053571 14 - TSS region transcription start site region 110132
Gm38951 11 94069679 to 94074488 4809 - lncRNA gene predicted gene, 38951
Tssr104172 11 94076392 to 94076421 29 + TSS region transcription start site region 104172
Tssr104173 11 94081328 to 94081374 46 + TSS region transcription start site region 104173