Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:93643557-94463571

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stzid3 11 63428581 to 94173092 30744511 QTL streptozotocin induced diabetes susceptibility 3
Gm11502 11 93650944 to 93651969 1025 + pseudogene predicted gene 11502
Gm11506 11 93695082 to 93695551 469 + pseudogene predicted gene 11506
Gm35148 11 93791348 to 93808355 17007 - lncRNA gene predicted gene, 35148
D11Mit358 11 93832517 to 93832665 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 358
Utp18 11 93859243 to 93885766 26523 - protein coding gene UTP18 small subunit processome component
Tssr110105 11 93859730 to 93859735 5 - TSS region transcription start site region 110105
Tssr110106 11 93884262 to 93884265 3 - TSS region transcription start site region 110106
Cpgi3539 11 93884822 to 93886573 1751 CpG island CpG island 3539
Tssr104149 11 93885102 to 93885141 39 + TSS region transcription start site region 104149
Tssr104150 11 93885271 to 93885289 18 + TSS region transcription start site region 104150
Tssr110107 11 93885660 to 93885719 59 - TSS region transcription start site region 110107
Tssr110108 11 93885724 to 93885741 17 - TSS region transcription start site region 110108
Tssr110109 11 93885752 to 93885773 21 - TSS region transcription start site region 110109
Tssr3641 11 93885824 to 93885877 53 + TSS region transcription start site region 3641
Mbtd1 11 93885852 to 93946985 61133 + protein coding gene mbt domain containing 1
Tssr104151 11 93885884 to 93885924 40 + TSS region transcription start site region 104151
Tssr110110 11 93886091 to 93886140 49 - TSS region transcription start site region 110110
Tssr104152 11 93886137 to 93886154 17 + TSS region transcription start site region 104152
Tssr104153 11 93886157 to 93886210 53 + TSS region transcription start site region 104153
Tssr104154 11 93886229 to 93886234 5 + TSS region transcription start site region 104154
Tssr104155 11 93886245 to 93886259 14 + TSS region transcription start site region 104155
Tssr110111 11 93886502 to 93886512 10 - TSS region transcription start site region 110111
Tssr104156 11 93898621 to 93898624 3 + TSS region transcription start site region 104156
Tssr104157 11 93924482 to 93924499 17 + TSS region transcription start site region 104157
D11Mit1002 11 93931330 to 93931454 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1002
Nme2 11 93949814 to 93956256 6442 - protein coding gene NME/NM23 nucleoside diphosphate kinase 2
Gm20390 11 93949819 to 93968293 18474 - protein coding gene predicted gene 20390
Cpgi3540 11 93955182 to 93956133 951 CpG island CpG island 3540
Tssr104158 11 93955316 to 93955328 12 + TSS region transcription start site region 104158
Tssr110112 11 93955628 to 93955707 79 - TSS region transcription start site region 110112
Tssr110113 11 93955718 to 93955729 11 - TSS region transcription start site region 110113
Tssr110114 11 93955873 to 93955888 15 - TSS region transcription start site region 110114
Tssr110115 11 93955900 to 93955930 30 - TSS region transcription start site region 110115
Tssr110116 11 93955933 to 93955944 11 - TSS region transcription start site region 110116
Tssr110117 11 93955999 to 93956006 7 - TSS region transcription start site region 110117
Nme1 11 93958925 to 93968521 9596 - protein coding gene NME/NM23 nucleoside diphosphate kinase 1
Tssr110118 11 93965932 to 93965956 24 - TSS region transcription start site region 110118
Tssr110119 11 93965957 to 93965966 9 - TSS region transcription start site region 110119
Cpgi3541 11 93967867 to 93968574 707 CpG island CpG island 3541
Tssr110120 11 93968023 to 93968053 30 - TSS region transcription start site region 110120
Tssr110121 11 93968242 to 93968281 39 - TSS region transcription start site region 110121
Tssr110122 11 93968297 to 93968308 11 - TSS region transcription start site region 110122
Gm35198 11 93968601 to 93982695 14094 + lncRNA gene predicted gene, 35198
Tssr110123 11 93988834 to 93988843 9 - TSS region transcription start site region 110123
Tssr110124 11 93995185 to 93995196 11 - TSS region transcription start site region 110124
Tssr104159 11 93995360 to 93995384 24 + TSS region transcription start site region 104159
Tssr104160 11 93995400 to 93995414 14 + TSS region transcription start site region 104160
Cpgi3542 11 93995593 to 93997030 1437 CpG island CpG island 3542
Tssr110125 11 93995781 to 93995814 33 - TSS region transcription start site region 110125
Tssr3642 11 93995820 to 93995853 33 - TSS region transcription start site region 3642
Tssr104161 11 93996057 to 93996066 9 + TSS region transcription start site region 104161
Tssr104162 11 93996082 to 93996099 17 + TSS region transcription start site region 104162
Spag9 11 93996091 to 94126085 129994 + protein coding gene sperm associated antigen 9
Tssr110126 11 93996750 to 93996763 13 - TSS region transcription start site region 110126
Tssr110127 11 93996766 to 93996790 24 - TSS region transcription start site region 110127
Tssr110128 11 93996825 to 93996835 10 - TSS region transcription start site region 110128
Tssr110129 11 93997234 to 93997238 4 - TSS region transcription start site region 110129
Gm11518 11 94037218 to 94037628 410 - pseudogene predicted gene 11518
Tssr104163 11 94044100 to 94044105 5 + TSS region transcription start site region 104163
Tssr104164 11 94044111 to 94044121 10 + TSS region transcription start site region 104164
Tssr104165 11 94044124 to 94044136 12 + TSS region transcription start site region 104165
Tssr104166 11 94044142 to 94044156 14 + TSS region transcription start site region 104166
Tssr104167 11 94044194 to 94044238 44 + TSS region transcription start site region 104167
Tssr104168 11 94044241 to 94044273 32 + TSS region transcription start site region 104168
Tssr104169 11 94044289 to 94044296 7 + TSS region transcription start site region 104169
Tssr104170 11 94044324 to 94044329 5 + TSS region transcription start site region 104170
Tssr104171 11 94044331 to 94044342 11 + TSS region transcription start site region 104171
Tssr110130 11 94052455 to 94052460 5 - TSS region transcription start site region 110130
Tssr110131 11 94053537 to 94053551 14 - TSS region transcription start site region 110131
Tssr110132 11 94053557 to 94053571 14 - TSS region transcription start site region 110132
Gm38951 11 94069679 to 94074488 4809 - lncRNA gene predicted gene, 38951
Tssr104172 11 94076392 to 94076421 29 + TSS region transcription start site region 104172
Tssr104173 11 94081328 to 94081374 46 + TSS region transcription start site region 104173
Tssr104174 11 94111623 to 94111632 9 + TSS region transcription start site region 104174
Tssr3643 11 94133426 to 94133469 43 + TSS region transcription start site region 3643
Tssr104175 11 94133479 to 94133490 11 + TSS region transcription start site region 104175
B230206L02Rik 11 94133485 to 94155776 22291 + unclassified non-coding RNA gene RIKEN cDNA B230206L02 gene
Tssr104176 11 94137671 to 94137682 11 + TSS region transcription start site region 104176
Tssr104177 11 94139917 to 94139920 3 + TSS region transcription start site region 104177
Gm35338 11 94140269 to 94172671 32402 - lncRNA gene predicted gene, 35338
Cpgi3543 11 94148840 to 94149637 797 CpG island CpG island 3543
Tssr110133 11 94172368 to 94172372 4 - TSS region transcription start site region 110133
Par1 11 94172953 to 96276595 2103642 QTL pulmonary adenoma resistance 1
D11Mit70 11 94172953 to 94173092 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 70
Par8 11 94172953 to 94173092 139 QTL pulmonary adenoma resistance 8
Tssr110134 11 94180319 to 94180342 23 - TSS region transcription start site region 110134
Tssr110135 11 94202194 to 94202203 9 - TSS region transcription start site region 110135
Tssr104178 11 94209828 to 94209852 24 + TSS region transcription start site region 104178
Tssr104179 11 94209869 to 94209898 29 + TSS region transcription start site region 104179
Cpgi3544 11 94210274 to 94212387 2113 CpG island CpG island 3544
Tssr104180 11 94210404 to 94210436 32 + TSS region transcription start site region 104180
Tssr104181 11 94210439 to 94210454 15 + TSS region transcription start site region 104181
Tssr104182 11 94211431 to 94211446 15 + TSS region transcription start site region 104182
Tob1 11 94211454 to 94215495 4041 + protein coding gene transducer of ErbB-2.1
Tssr104183 11 94213817 to 94213834 17 + TSS region transcription start site region 104183
Cpgi3545 11 94213852 to 94214109 257 CpG island CpG island 3545
Tssr104184 11 94213977 to 94213989 12 + TSS region transcription start site region 104184
Tssr104185 11 94214557 to 94214591 34 + TSS region transcription start site region 104185
Tssr104186 11 94214806 to 94214817 11 + TSS region transcription start site region 104186
Tssr104187 11 94214827 to 94214838 11 + TSS region transcription start site region 104187
Wfikkn2 11 94235956 to 94246005 10049 - protein coding gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
Tssr110136 11 94242656 to 94242664 8 - TSS region transcription start site region 110136
Tssr110137 11 94242701 to 94242729 28 - TSS region transcription start site region 110137
Tssr110138 11 94242733 to 94242759 26 - TSS region transcription start site region 110138
Tssr110139 11 94242905 to 94242929 24 - TSS region transcription start site region 110139
Tssr110140 11 94242939 to 94242956 17 - TSS region transcription start site region 110140
Tssr110141 11 94253844 to 94253878 34 - TSS region transcription start site region 110141
Gm38953 11 94269956 to 94271397 1441 - lncRNA gene predicted gene, 38953
Gm38956 11 94271439 to 94277877 6438 - lncRNA gene predicted gene, 38956
Cpgi3546 11 94276962 to 94277359 397 CpG island CpG island 3546
Tssr104188 11 94281831 to 94281865 34 + TSS region transcription start site region 104188
Gm21885 11 94281873 to 94286253 4380 + protein coding gene predicted gene, 21885
Luc7l3 11 94291137 to 94321985 30848 - protein coding gene LUC7-like 3 (S. cerevisiae)
Tssr110142 11 94295090 to 94295094 4 - TSS region transcription start site region 110142
Tssr110143 11 94296963 to 94296983 20 - TSS region transcription start site region 110143
Tssr104189 11 94297009 to 94297048 39 + TSS region transcription start site region 104189
Tssr110144 11 94297123 to 94297138 15 - TSS region transcription start site region 110144
Tssr110145 11 94297783 to 94297819 36 - TSS region transcription start site region 110145
Tssr110146 11 94297821 to 94297836 15 - TSS region transcription start site region 110146
Tssr110147 11 94297840 to 94297887 47 - TSS region transcription start site region 110147
Tssr110148 11 94299977 to 94300068 91 - TSS region transcription start site region 110148
Tssr110149 11 94301572 to 94301585 13 - TSS region transcription start site region 110149
Tssr110150 11 94302480 to 94302483 3 - TSS region transcription start site region 110150
Tssr110151 11 94303868 to 94303891 23 - TSS region transcription start site region 110151
Tssr110152 11 94303928 to 94303948 20 - TSS region transcription start site region 110152
Tssr110153 11 94305295 to 94305299 4 - TSS region transcription start site region 110153
Tssr110154 11 94309648 to 94309667 19 - TSS region transcription start site region 110154
Tssr110155 11 94309684 to 94309697 13 - TSS region transcription start site region 110155
Tssr3644 11 94317670 to 94317686 16 - TSS region transcription start site region 3644
Cpgi3547 11 94321147 to 94322456 1309 CpG island CpG island 3547
Tssr110156 11 94321443 to 94321494 51 - TSS region transcription start site region 110156
Tssr110157 11 94321898 to 94321909 11 - TSS region transcription start site region 110157
Tssr110158 11 94321910 to 94321943 33 - TSS region transcription start site region 110158
Tssr110159 11 94321957 to 94321968 11 - TSS region transcription start site region 110159
Tssr104190 11 94322076 to 94322108 32 + TSS region transcription start site region 104190
Cpgi3548 11 94327795 to 94328629 834 CpG island CpG island 3548
Tssr104191 11 94327984 to 94328029 45 + TSS region transcription start site region 104191
Ankrd40 11 94328001 to 94341841 13840 + protein coding gene ankyrin repeat domain 40
Tssr104192 11 94328037 to 94328064 27 + TSS region transcription start site region 104192
Tssr104193 11 94328067 to 94328077 10 + TSS region transcription start site region 104193
Tssr104194 11 94328080 to 94328089 9 + TSS region transcription start site region 104194
Tssr104195 11 94328097 to 94328108 11 + TSS region transcription start site region 104195
Tssr104196 11 94328146 to 94328176 30 + TSS region transcription start site region 104196
Tssr104197 11 94328220 to 94328238 18 + TSS region transcription start site region 104197
Tssr104198 11 94328242 to 94328261 19 + TSS region transcription start site region 104198
Tssr104199 11 94328262 to 94328278 16 + TSS region transcription start site region 104199
Tssr104200 11 94329642 to 94329650 8 + TSS region transcription start site region 104200
Tssr104201 11 94339844 to 94339855 11 + TSS region transcription start site region 104201
Abcc3 11 94343295 to 94392997 49702 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 3
Tssr110160 11 94346132 to 94346157 25 - TSS region transcription start site region 110160
Tssr110161 11 94351346 to 94351350 4 - TSS region transcription start site region 110161
Cpgi3549 11 94351810 to 94352215 405 CpG island CpG island 3549
Tssr110162 11 94352102 to 94352129 27 - TSS region transcription start site region 110162
Tssr110163 11 94352144 to 94352153 9 - TSS region transcription start site region 110163
Tssr104202 11 94352169 to 94352192 23 + TSS region transcription start site region 104202
Tssr104203 11 94352200 to 94352211 11 + TSS region transcription start site region 104203
Tssr110164 11 94358846 to 94358856 10 - TSS region transcription start site region 110164
Tssr110165 11 94358868 to 94358877 9 - TSS region transcription start site region 110165
Tssr110166 11 94360148 to 94360150 2 - TSS region transcription start site region 110166
Tssr104204 11 94363937 to 94363946 9 + TSS region transcription start site region 104204
Tssr104205 11 94363947 to 94363950 3 + TSS region transcription start site region 104205
Tssr110167 11 94365419 to 94365426 7 - TSS region transcription start site region 110167
Tssr110168 11 94365434 to 94365448 14 - TSS region transcription start site region 110168
Tssr110169 11 94371740 to 94371752 12 - TSS region transcription start site region 110169
Tssr110170 11 94375112 to 94375135 23 - TSS region transcription start site region 110170
Cpgi3550 11 94392660 to 94392957 297 CpG island CpG island 3550
Tssr110171 11 94392917 to 94392983 66 - TSS region transcription start site region 110171
Cacna1g 11 94408391 to 94474198 65807 - protein coding gene calcium channel, voltage-dependent, T type, alpha 1G subunit
Tssr110172 11 94451835 to 94451863 28 - TSS region transcription start site region 110172
Tssr110173 11 94456460 to 94456469 9 - TSS region transcription start site region 110173
Pregq2 11 118131898 to 94172953 -23958945 QTL pregnancy QTL 2