Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:93175486-94025517

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Car10 11 93098141 to 93601751 503610 + protein coding gene carbonic anhydrase 10
Tssr104141 11 93320282 to 93320285 3 + TSS region transcription start site region 104141
9630002A11Rik 11 93326403 to 93330246 3843 unclassified gene RIKEN cDNA 9630002A11 gene
Tssr104142 11 93341508 to 93341515 7 + TSS region transcription start site region 104142
Gm35002 11 93360191 to 93393742 33551 + lncRNA gene predicted gene, 35002
Tssr104143 11 93378500 to 93378505 5 + TSS region transcription start site region 104143
Tssr104144 11 93401604 to 93401643 39 + TSS region transcription start site region 104144
Gm24856 11 93413218 to 93413324 106 - snRNA gene predicted gene, 24856
Tssr104145 11 93421425 to 93421430 5 + TSS region transcription start site region 104145
Tssr104146 11 93568816 to 93568819 3 + TSS region transcription start site region 104146
Tssr104147 11 93597183 to 93597197 14 + TSS region transcription start site region 104147
Tssr104148 11 93600486 to 93600517 31 + TSS region transcription start site region 104148
Tssr110104 11 93614939 to 93614944 5 - TSS region transcription start site region 110104
Gm11502 11 93650944 to 93651969 1025 + pseudogene predicted gene 11502
Gm11506 11 93695082 to 93695551 469 + pseudogene predicted gene 11506
Gm35148 11 93791348 to 93808355 17007 - lncRNA gene predicted gene, 35148
D11Mit358 11 93832517 to 93832665 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 358
Utp18 11 93859243 to 93885766 26523 - protein coding gene UTP18 small subunit processome component
Tssr110105 11 93859730 to 93859735 5 - TSS region transcription start site region 110105
Tssr110106 11 93884262 to 93884265 3 - TSS region transcription start site region 110106
Cpgi3539 11 93884822 to 93886573 1751 CpG island CpG island 3539
Tssr104149 11 93885102 to 93885141 39 + TSS region transcription start site region 104149
Tssr104150 11 93885271 to 93885289 18 + TSS region transcription start site region 104150
Tssr110107 11 93885660 to 93885719 59 - TSS region transcription start site region 110107
Tssr110108 11 93885724 to 93885741 17 - TSS region transcription start site region 110108
Tssr110109 11 93885752 to 93885773 21 - TSS region transcription start site region 110109
Tssr3641 11 93885824 to 93885877 53 + TSS region transcription start site region 3641
Mbtd1 11 93885852 to 93946985 61133 + protein coding gene mbt domain containing 1
Tssr104151 11 93885884 to 93885924 40 + TSS region transcription start site region 104151
Tssr110110 11 93886091 to 93886140 49 - TSS region transcription start site region 110110
Tssr104152 11 93886137 to 93886154 17 + TSS region transcription start site region 104152
Tssr104153 11 93886157 to 93886210 53 + TSS region transcription start site region 104153
Tssr104154 11 93886229 to 93886234 5 + TSS region transcription start site region 104154
Tssr104155 11 93886245 to 93886259 14 + TSS region transcription start site region 104155
Tssr110111 11 93886502 to 93886512 10 - TSS region transcription start site region 110111
Tssr104156 11 93898621 to 93898624 3 + TSS region transcription start site region 104156
Tssr104157 11 93924482 to 93924499 17 + TSS region transcription start site region 104157
D11Mit1002 11 93931330 to 93931454 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1002
Nme2 11 93949814 to 93956256 6442 - protein coding gene NME/NM23 nucleoside diphosphate kinase 2
Gm20390 11 93949819 to 93968293 18474 - protein coding gene predicted gene 20390
Cpgi3540 11 93955182 to 93956133 951 CpG island CpG island 3540
Tssr104158 11 93955316 to 93955328 12 + TSS region transcription start site region 104158
Tssr110112 11 93955628 to 93955707 79 - TSS region transcription start site region 110112
Tssr110113 11 93955718 to 93955729 11 - TSS region transcription start site region 110113
Tssr110114 11 93955873 to 93955888 15 - TSS region transcription start site region 110114
Tssr110115 11 93955900 to 93955930 30 - TSS region transcription start site region 110115
Tssr110116 11 93955933 to 93955944 11 - TSS region transcription start site region 110116
Tssr110117 11 93955999 to 93956006 7 - TSS region transcription start site region 110117
Nme1 11 93958925 to 93968521 9596 - protein coding gene NME/NM23 nucleoside diphosphate kinase 1
Tssr110118 11 93965932 to 93965956 24 - TSS region transcription start site region 110118
Tssr110119 11 93965957 to 93965966 9 - TSS region transcription start site region 110119
Cpgi3541 11 93967867 to 93968574 707 CpG island CpG island 3541
Tssr110120 11 93968023 to 93968053 30 - TSS region transcription start site region 110120
Tssr110121 11 93968242 to 93968281 39 - TSS region transcription start site region 110121
Tssr110122 11 93968297 to 93968308 11 - TSS region transcription start site region 110122
Gm35198 11 93968601 to 93982695 14094 + lncRNA gene predicted gene, 35198
Tssr110123 11 93988834 to 93988843 9 - TSS region transcription start site region 110123
Tssr110124 11 93995185 to 93995196 11 - TSS region transcription start site region 110124
Tssr104159 11 93995360 to 93995384 24 + TSS region transcription start site region 104159
Tssr104160 11 93995400 to 93995414 14 + TSS region transcription start site region 104160
Cpgi3542 11 93995593 to 93997030 1437 CpG island CpG island 3542
Tssr110125 11 93995781 to 93995814 33 - TSS region transcription start site region 110125
Tssr3642 11 93995820 to 93995853 33 - TSS region transcription start site region 3642
Tssr104161 11 93996057 to 93996066 9 + TSS region transcription start site region 104161
Tssr104162 11 93996082 to 93996099 17 + TSS region transcription start site region 104162
Spag9 11 93996091 to 94126085 129994 + protein coding gene sperm associated antigen 9
Tssr110126 11 93996750 to 93996763 13 - TSS region transcription start site region 110126
Tssr110127 11 93996766 to 93996790 24 - TSS region transcription start site region 110127
Tssr110128 11 93996825 to 93996835 10 - TSS region transcription start site region 110128
Tssr110129 11 93997234 to 93997238 4 - TSS region transcription start site region 110129