Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:9259770-11490082

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abca13 11 9191942 to 9684259 492317 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 13
Tssr3425 11 9598077 to 9598078 1 + TSS region transcription start site region 3425
Gm36954 11 9705261 to 9705623 362 - unclassified gene predicted gene, 36954
D11Mit259 11 9736728 to 9736842 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 259
Eif3s6-ps1 11 9737152 to 9737621 469 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 1
Tssr106858 11 9873737 to 9873754 17 - TSS region transcription start site region 106858
Tssr106859 11 9873808 to 9873816 8 - TSS region transcription start site region 106859
Gm11996 11 10239337 to 10240251 914 + pseudogene predicted gene 11996
Tssr100340 11 10292213 to 10292215 2 + TSS region transcription start site region 100340
Gm20551 11 10374770 to 10375082 312 - pseudogene predicted gene, 20551
Gm11997 11 10376770 to 10377082 312 - pseudogene predicted gene 11997
Gm46255 11 10438451 to 10441867 3416 - protein coding gene predicted gene, 46255
Tssr3426 11 10545135 to 10545136 1 + TSS region transcription start site region 3426
Cpgi2580 11 11113806 to 11114755 949 CpG island CpG island 2580
Tssr100341 11 11114125 to 11114148 23 + TSS region transcription start site region 100341
Vwc2 11 11114223 to 11268931 154708 + protein coding gene von Willebrand factor C domain containing 2
Cpgi2581 11 11115347 to 11116660 1313 CpG island CpG island 2581
Tssr100342 11 11115784 to 11115790 6 + TSS region transcription start site region 100342
Gm23065 11 11140514 to 11140643 129 + rRNA gene predicted gene, 23065
Tssr100343 11 11171325 to 11171327 2 + TSS region transcription start site region 100343
Gm39578 11 11251022 to 11254390 3368 - lncRNA gene predicted gene, 39578
Zpbp 11 11279626 to 11462408 182782 - protein coding gene zona pellucida binding protein
Gm12598 11 11312433 to 11313262 829 + pseudogene predicted gene 12598
Tssr106860 11 11404926 to 11404930 4 - TSS region transcription start site region 106860
Gm26458 11 11427385 to 11427512 127 - snoRNA gene predicted gene, 26458
Gm12599 11 11436984 to 11437775 791 + pseudogene predicted gene 12599
Tssr106861 11 11451200 to 11451204 4 - TSS region transcription start site region 106861
Cpgi2582 11 11461737 to 11462549 812 CpG island CpG island 2582
Tssr100344 11 11462079 to 11462103 24 + TSS region transcription start site region 100344
Tssr3427 11 11462202 to 11462207 5 - TSS region transcription start site region 3427
Tssr106862 11 11462210 to 11462243 33 - TSS region transcription start site region 106862
Tssr106863 11 11462250 to 11462272 22 - TSS region transcription start site region 106863
Tssr106864 11 11462415 to 11462426 11 - TSS region transcription start site region 106864
Tssr106865 11 11462436 to 11462446 10 - TSS region transcription start site region 106865
Tssr100345 11 11462490 to 11462528 38 + TSS region transcription start site region 100345
Spata48 11 11463247 to 11515192 51945 + protein coding gene spermatogenesis associated 48
Tssr100346 11 11464020 to 11464056 36 + TSS region transcription start site region 100346
Tssr100347 11 11484553 to 11484568 15 + TSS region transcription start site region 100347