Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:90407586-92747590

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Cpgi3534 11 90417791 to 90418384 593 CpG island CpG island 3534
Gm34850 11 90463383 to 90472880 9497 - lncRNA gene predicted gene, 34850
Stxbp4 11 90476492 to 90638084 161592 - protein coding gene syntaxin binding protein 4
Gm11511 11 90516777 to 90517316 539 - pseudogene predicted gene 11511
Gm11512 11 90538484 to 90539146 662 - pseudogene predicted gene 11512
Tssr104121 11 90548839 to 90548872 33 + TSS region transcription start site region 104121
Tssr110094 11 90549427 to 90549436 9 - TSS region transcription start site region 110094
Tssr110095 11 90549438 to 90549446 8 - TSS region transcription start site region 110095
Tssr110096 11 90554018 to 90554027 9 - TSS region transcription start site region 110096
Tssr104122 11 90586547 to 90586558 11 + TSS region transcription start site region 104122
Cpgi3535 11 90637662 to 90638874 1212 CpG island CpG island 3535
Tssr110097 11 90638067 to 90638100 33 - TSS region transcription start site region 110097
Tssr104123 11 90638127 to 90638207 80 + TSS region transcription start site region 104123
Cox11 11 90638173 to 90644931 6758 + protein coding gene cytochrome c oxidase assembly protein 11, copper chaperone
Tssr104124 11 90638212 to 90638223 11 + TSS region transcription start site region 104124
Tssr104125 11 90638417 to 90638445 28 + TSS region transcription start site region 104125
Tssr104126 11 90639601 to 90639602 1 + TSS region transcription start site region 104126
Tom1l1 11 90645690 to 90687662 41972 - protein coding gene target of myb1-like 1 (chicken)
Tssr110098 11 90663803 to 90663807 4 - TSS region transcription start site region 110098
Tssr110099 11 90663927 to 90663934 7 - TSS region transcription start site region 110099
Tssr110100 11 90673694 to 90673710 16 - TSS region transcription start site region 110100
Tssr104127 11 90675967 to 90675978 11 + TSS region transcription start site region 104127
Tssr104128 11 90676003 to 90676015 12 + TSS region transcription start site region 104128
Tssr104129 11 90676024 to 90676044 20 + TSS region transcription start site region 104129
Cpgi3536 11 90687257 to 90688017 760 CpG island CpG island 3536
Tssr110101 11 90687572 to 90687606 34 - TSS region transcription start site region 110101
Gm34938 11 90732749 to 90734535 1786 + lncRNA gene predicted gene, 34938
Gm22762 11 90782413 to 90782549 136 - snoRNA gene predicted gene, 22762
Tssr104130 11 90804682 to 90804699 17 + TSS region transcription start site region 104130
4930405D11Rik 11 90804692 to 90895149 90457 + lincRNA gene RIKEN cDNA 4930405D11 gene
Gm11516 11 90859767 to 90861348 1581 - pseudogene predicted gene 11516
Tssr104131 11 90883321 to 90883325 4 + TSS region transcription start site region 104131
Gm46292 11 90969096 to 90973045 3949 - pseudogene predicted gene, 46292
Gm38950 11 91560593 to 91561807 1214 - lncRNA gene predicted gene, 38950
Kif2b 11 91575315 to 91577558 2243 - protein coding gene kinesin family member 2B
Cpgi3537 11 91576638 to 91576977 339 CpG island CpG island 3537
Tssr3639 11 91577503 to 91577512 9 - TSS region transcription start site region 3639
Tssr110102 11 91577513 to 91577574 61 - TSS region transcription start site region 110102
Tssr3640 11 91577586 to 91577590 4 - TSS region transcription start site region 3640
Gm11498 11 91830442 to 91831390 948 - pseudogene predicted gene 11498
D11Mit287 11 91994421 to 91994527 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 287
Gm22702 11 92024345 to 92024413 68 - miRNA gene predicted gene, 22702
Tssr110103 11 92047406 to 92047414 8 - TSS region transcription start site region 110103