Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:90382572-90992606

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Hlf 11 90336536 to 90390895 54359 - protein coding gene hepatic leukemia factor
Tssr110083 11 90382723 to 90382731 8 - TSS region transcription start site region 110083
Cpgi3532 11 90387621 to 90388022 401 CpG island CpG island 3532
Tssr110084 11 90388207 to 90388237 30 - TSS region transcription start site region 110084
Tssr110085 11 90388522 to 90388535 13 - TSS region transcription start site region 110085
Tssr110086 11 90389580 to 90389602 22 - TSS region transcription start site region 110086
Cpgi3533 11 90389581 to 90391171 1590 CpG island CpG island 3533
Tssr110087 11 90389630 to 90389668 38 - TSS region transcription start site region 110087
Tssr110088 11 90389685 to 90389699 14 - TSS region transcription start site region 110088
Tssr110089 11 90390538 to 90390541 3 - TSS region transcription start site region 110089
Tssr110090 11 90390646 to 90390658 12 - TSS region transcription start site region 110090
Tssr110091 11 90390757 to 90390779 22 - TSS region transcription start site region 110091
Tssr110092 11 90390794 to 90390820 26 - TSS region transcription start site region 110092
Tssr110093 11 90390909 to 90390926 17 - TSS region transcription start site region 110093
Cpgi3534 11 90417791 to 90418384 593 CpG island CpG island 3534
Gm34850 11 90463383 to 90472880 9497 - lncRNA gene predicted gene, 34850
Stxbp4 11 90476492 to 90638084 161592 - protein coding gene syntaxin binding protein 4
Gm11511 11 90516777 to 90517316 539 - pseudogene predicted gene 11511
Gm11512 11 90538484 to 90539146 662 - pseudogene predicted gene 11512
Tssr104121 11 90548839 to 90548872 33 + TSS region transcription start site region 104121
Tssr110094 11 90549427 to 90549436 9 - TSS region transcription start site region 110094
Tssr110095 11 90549438 to 90549446 8 - TSS region transcription start site region 110095
Tssr110096 11 90554018 to 90554027 9 - TSS region transcription start site region 110096
Tssr104122 11 90586547 to 90586558 11 + TSS region transcription start site region 104122
Cpgi3535 11 90637662 to 90638874 1212 CpG island CpG island 3535
Tssr110097 11 90638067 to 90638100 33 - TSS region transcription start site region 110097
Tssr104123 11 90638127 to 90638207 80 + TSS region transcription start site region 104123
Cox11 11 90638173 to 90644931 6758 + protein coding gene cytochrome c oxidase assembly protein 11, copper chaperone
Tssr104124 11 90638212 to 90638223 11 + TSS region transcription start site region 104124
Tssr104125 11 90638417 to 90638445 28 + TSS region transcription start site region 104125
Tssr104126 11 90639601 to 90639602 1 + TSS region transcription start site region 104126
Tom1l1 11 90645690 to 90687662 41972 - protein coding gene target of myb1-like 1 (chicken)
Tssr110098 11 90663803 to 90663807 4 - TSS region transcription start site region 110098
Tssr110099 11 90663927 to 90663934 7 - TSS region transcription start site region 110099
Tssr110100 11 90673694 to 90673710 16 - TSS region transcription start site region 110100
Tssr104127 11 90675967 to 90675978 11 + TSS region transcription start site region 104127
Tssr104128 11 90676003 to 90676015 12 + TSS region transcription start site region 104128
Tssr104129 11 90676024 to 90676044 20 + TSS region transcription start site region 104129
Cpgi3536 11 90687257 to 90688017 760 CpG island CpG island 3536
Tssr110101 11 90687572 to 90687606 34 - TSS region transcription start site region 110101
Gm34938 11 90732749 to 90734535 1786 + lncRNA gene predicted gene, 34938
Gm22762 11 90782413 to 90782549 136 - snoRNA gene predicted gene, 22762
Tssr104130 11 90804682 to 90804699 17 + TSS region transcription start site region 104130
4930405D11Rik 11 90804692 to 90895149 90457 + lincRNA gene RIKEN cDNA 4930405D11 gene
Gm11516 11 90859767 to 90861348 1581 - pseudogene predicted gene 11516
Tssr104131 11 90883321 to 90883325 4 + TSS region transcription start site region 104131
Gm46292 11 90969096 to 90973045 3949 - pseudogene predicted gene, 46292