Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:90049421-93939527

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Gm34726 11 90043364 to 90130395 87031 - lncRNA gene predicted gene, 34726
Tssr110080 11 90121810 to 90121815 5 - TSS region transcription start site region 110080
Tssr110081 11 90130235 to 90130258 23 - TSS region transcription start site region 110081
Tssr110082 11 90130266 to 90130277 11 - TSS region transcription start site region 110082
Gm11494 11 90134842 to 90143624 8782 - lincRNA gene predicted gene 11494
n-R5s72 11 90185009 to 90185127 118 - rRNA gene nuclear encoded rRNA 5S 72
Tssr104108 11 90187658 to 90187690 32 + TSS region transcription start site region 104108
Gm45716 11 90187683 to 90251255 63572 + protein coding gene predicted gene 45716
Tssr104109 11 90187701 to 90187707 6 + TSS region transcription start site region 104109
Gm45883 11 90188108 to 90267581 79473 + unclassified non-coding RNA gene predicted gene 45883
Gm42089 11 90195067 to 90225568 30501 - lncRNA gene predicted gene, 42089
Cpgi3531 11 90249027 to 90250120 1093 CpG island CpG island 3531
Tssr104110 11 90249426 to 90249448 22 + TSS region transcription start site region 104110
Mmd 11 90249456 to 90278589 29133 + protein coding gene monocyte to macrophage differentiation-associated
Tssr104111 11 90249469 to 90249482 13 + TSS region transcription start site region 104111
Tssr104112 11 90249487 to 90249503 16 + TSS region transcription start site region 104112
Tssr104113 11 90249513 to 90249532 19 + TSS region transcription start site region 104113
Tssr104114 11 90249565 to 90249574 9 + TSS region transcription start site region 104114
Tssr104115 11 90249580 to 90249589 9 + TSS region transcription start site region 104115
D11Mit286 11 90252959 to 90253082 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 286
D11Dcr16 11 90252981 to 90253081 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 16
Tssr104116 11 90255140 to 90255159 19 + TSS region transcription start site region 104116
Tssr104117 11 90257361 to 90257378 17 + TSS region transcription start site region 104117
Tssr104118 11 90257395 to 90257407 12 + TSS region transcription start site region 104118
Tssr104119 11 90259403 to 90259435 32 + TSS region transcription start site region 104119
D11Mit357 11 90263212 to 90263360 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 357
Tssr104120 11 90276929 to 90276969 40 + TSS region transcription start site region 104120
Hlf 11 90336536 to 90390895 54359 - protein coding gene hepatic leukemia factor
2900006B11Rik 11 90356561 to 90357829 1268 unclassified gene RIKEN cDNA 2900006B11 gene
Tssr110083 11 90382723 to 90382731 8 - TSS region transcription start site region 110083
Cpgi3532 11 90387621 to 90388022 401 CpG island CpG island 3532
Tssr110084 11 90388207 to 90388237 30 - TSS region transcription start site region 110084
Tssr110085 11 90388522 to 90388535 13 - TSS region transcription start site region 110085
Tssr110086 11 90389580 to 90389602 22 - TSS region transcription start site region 110086
Cpgi3533 11 90389581 to 90391171 1590 CpG island CpG island 3533
Tssr110087 11 90389630 to 90389668 38 - TSS region transcription start site region 110087
Tssr110088 11 90389685 to 90389699 14 - TSS region transcription start site region 110088
Tssr110089 11 90390538 to 90390541 3 - TSS region transcription start site region 110089
Tssr110090 11 90390646 to 90390658 12 - TSS region transcription start site region 110090
Tssr110091 11 90390757 to 90390779 22 - TSS region transcription start site region 110091
Tssr110092 11 90390794 to 90390820 26 - TSS region transcription start site region 110092
Tssr110093 11 90390909 to 90390926 17 - TSS region transcription start site region 110093
Cpgi3534 11 90417791 to 90418384 593 CpG island CpG island 3534
Gm34850 11 90463383 to 90472880 9497 - lncRNA gene predicted gene, 34850
Stxbp4 11 90476492 to 90638084 161592 - protein coding gene syntaxin binding protein 4
Gm11511 11 90516777 to 90517316 539 - pseudogene predicted gene 11511
Gm11512 11 90538484 to 90539146 662 - pseudogene predicted gene 11512
Tssr104121 11 90548839 to 90548872 33 + TSS region transcription start site region 104121
Tssr110094 11 90549427 to 90549436 9 - TSS region transcription start site region 110094
Tssr110095 11 90549438 to 90549446 8 - TSS region transcription start site region 110095
Tssr110096 11 90554018 to 90554027 9 - TSS region transcription start site region 110096
Tssr104122 11 90586547 to 90586558 11 + TSS region transcription start site region 104122
Cpgi3535 11 90637662 to 90638874 1212 CpG island CpG island 3535
Tssr110097 11 90638067 to 90638100 33 - TSS region transcription start site region 110097
Tssr104123 11 90638127 to 90638207 80 + TSS region transcription start site region 104123
Cox11 11 90638173 to 90644931 6758 + protein coding gene cytochrome c oxidase assembly protein 11, copper chaperone
Tssr104124 11 90638212 to 90638223 11 + TSS region transcription start site region 104124
Tssr104125 11 90638417 to 90638445 28 + TSS region transcription start site region 104125
Tssr104126 11 90639601 to 90639602 1 + TSS region transcription start site region 104126
Tom1l1 11 90645690 to 90687662 41972 - protein coding gene target of myb1-like 1 (chicken)
Tssr110098 11 90663803 to 90663807 4 - TSS region transcription start site region 110098
Tssr110099 11 90663927 to 90663934 7 - TSS region transcription start site region 110099
Tssr110100 11 90673694 to 90673710 16 - TSS region transcription start site region 110100
Tssr104127 11 90675967 to 90675978 11 + TSS region transcription start site region 104127
Tssr104128 11 90676003 to 90676015 12 + TSS region transcription start site region 104128
Tssr104129 11 90676024 to 90676044 20 + TSS region transcription start site region 104129
Cpgi3536 11 90687257 to 90688017 760 CpG island CpG island 3536
Tssr110101 11 90687572 to 90687606 34 - TSS region transcription start site region 110101
Gm34938 11 90732749 to 90734535 1786 + lncRNA gene predicted gene, 34938
Gm22762 11 90782413 to 90782549 136 - snoRNA gene predicted gene, 22762
Tssr104130 11 90804682 to 90804699 17 + TSS region transcription start site region 104130
4930405D11Rik 11 90804692 to 90895149 90457 + lincRNA gene RIKEN cDNA 4930405D11 gene
Gm11516 11 90859767 to 90861348 1581 - pseudogene predicted gene 11516
Tssr104131 11 90883321 to 90883325 4 + TSS region transcription start site region 104131
Gm46292 11 90969096 to 90973045 3949 - pseudogene predicted gene, 46292
Gm38950 11 91560593 to 91561807 1214 - lncRNA gene predicted gene, 38950
Kif2b 11 91575315 to 91577558 2243 - protein coding gene kinesin family member 2B
Cpgi3537 11 91576638 to 91576977 339 CpG island CpG island 3537
Tssr3639 11 91577503 to 91577512 9 - TSS region transcription start site region 3639
Tssr110102 11 91577513 to 91577574 61 - TSS region transcription start site region 110102
Tssr3640 11 91577586 to 91577590 4 - TSS region transcription start site region 3640
Gm11498 11 91830442 to 91831390 948 - pseudogene predicted gene 11498
D11Mit287 11 91994421 to 91994527 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 287
Gm22702 11 92024345 to 92024413 68 - miRNA gene predicted gene, 22702
Tssr110103 11 92047406 to 92047414 8 - TSS region transcription start site region 110103
Gm11500 11 92770034 to 92770973 939 - pseudogene predicted gene 11500
Gm11501 11 92792704 to 92793279 575 - pseudogene predicted gene 11501
Gm25113 11 92910297 to 92910439 142 + snoRNA gene predicted gene, 25113
Tssr104132 11 93014434 to 93014480 46 + TSS region transcription start site region 104132
D11Mit122 11 93048547 to 93048672 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 122
Gm2138 11 93096816 to 93099992 3176 unclassified non-coding RNA gene predicted gene 2138
Cpgi3538 11 93098004 to 93100219 2215 CpG island CpG island 3538
Tssr104133 11 93098037 to 93098056 19 + TSS region transcription start site region 104133
Car10 11 93098141 to 93601751 503610 + protein coding gene carbonic anhydrase 10
Tssr104134 11 93098357 to 93098397 40 + TSS region transcription start site region 104134
Tssr104135 11 93098405 to 93098437 32 + TSS region transcription start site region 104135
Tssr104136 11 93099220 to 93099230 10 + TSS region transcription start site region 104136
Tssr104137 11 93099240 to 93099249 9 + TSS region transcription start site region 104137
Tssr104138 11 93099284 to 93099331 47 + TSS region transcription start site region 104138
Tssr104139 11 93099665 to 93099676 11 + TSS region transcription start site region 104139
Tssr104140 11 93100189 to 93100201 12 + TSS region transcription start site region 104140
Tssr104141 11 93320282 to 93320285 3 + TSS region transcription start site region 104141
9630002A11Rik 11 93326403 to 93330246 3843 unclassified gene RIKEN cDNA 9630002A11 gene
Tssr104142 11 93341508 to 93341515 7 + TSS region transcription start site region 104142
Gm35002 11 93360191 to 93393742 33551 + lncRNA gene predicted gene, 35002
Tssr104143 11 93378500 to 93378505 5 + TSS region transcription start site region 104143
Tssr104144 11 93401604 to 93401643 39 + TSS region transcription start site region 104144
Gm24856 11 93413218 to 93413324 106 - snRNA gene predicted gene, 24856
Tssr104145 11 93421425 to 93421430 5 + TSS region transcription start site region 104145
Tssr104146 11 93568816 to 93568819 3 + TSS region transcription start site region 104146
Tssr104147 11 93597183 to 93597197 14 + TSS region transcription start site region 104147
Tssr104148 11 93600486 to 93600517 31 + TSS region transcription start site region 104148
Tssr110104 11 93614939 to 93614944 5 - TSS region transcription start site region 110104
Gm11502 11 93650944 to 93651969 1025 + pseudogene predicted gene 11502
Gm11506 11 93695082 to 93695551 469 + pseudogene predicted gene 11506
Gm35148 11 93791348 to 93808355 17007 - lncRNA gene predicted gene, 35148
D11Mit358 11 93832517 to 93832665 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 358
Utp18 11 93859243 to 93885766 26523 - protein coding gene UTP18 small subunit processome component
Tssr110105 11 93859730 to 93859735 5 - TSS region transcription start site region 110105
Tssr110106 11 93884262 to 93884265 3 - TSS region transcription start site region 110106
Cpgi3539 11 93884822 to 93886573 1751 CpG island CpG island 3539
Tssr104149 11 93885102 to 93885141 39 + TSS region transcription start site region 104149
Tssr104150 11 93885271 to 93885289 18 + TSS region transcription start site region 104150
Tssr110107 11 93885660 to 93885719 59 - TSS region transcription start site region 110107
Tssr110108 11 93885724 to 93885741 17 - TSS region transcription start site region 110108
Tssr110109 11 93885752 to 93885773 21 - TSS region transcription start site region 110109
Tssr3641 11 93885824 to 93885877 53 + TSS region transcription start site region 3641
Mbtd1 11 93885852 to 93946985 61133 + protein coding gene mbt domain containing 1
Tssr104151 11 93885884 to 93885924 40 + TSS region transcription start site region 104151
Tssr110110 11 93886091 to 93886140 49 - TSS region transcription start site region 110110
Tssr104152 11 93886137 to 93886154 17 + TSS region transcription start site region 104152
Tssr104153 11 93886157 to 93886210 53 + TSS region transcription start site region 104153
Tssr104154 11 93886229 to 93886234 5 + TSS region transcription start site region 104154
Tssr104155 11 93886245 to 93886259 14 + TSS region transcription start site region 104155
Tssr110111 11 93886502 to 93886512 10 - TSS region transcription start site region 110111
Tssr104156 11 93898621 to 93898624 3 + TSS region transcription start site region 104156
Tssr104157 11 93924482 to 93924499 17 + TSS region transcription start site region 104157
D11Mit1002 11 93931330 to 93931454 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1002
Heal26 11 112653728 to 93048547 -19605181 QTL wound healing/regeneration 26