Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88879398-89140293

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
4930556N13Rik 11 88851604 to 88881395 29791 + antisense lncRNA gene RIKEN cDNA 4930556N13 gene
Gm23507 11 88905121 to 88905227 106 + snRNA gene predicted gene, 23507
Tssr104055 11 88905925 to 88905938 13 + TSS region transcription start site region 104055
Scpep1os 11 88905928 to 88936061 30133 + antisense lncRNA gene serine carboxypeptidase 1, opposite strand
Scpep1 11 88924020 to 88955442 31422 - protein coding gene serine carboxypeptidase 1
Tssr110047 11 88924268 to 88924276 8 - TSS region transcription start site region 110047
Tssr110048 11 88924283 to 88924293 10 - TSS region transcription start site region 110048
Tssr110049 11 88924337 to 88924348 11 - TSS region transcription start site region 110049
Tssr110050 11 88924539 to 88924559 20 - TSS region transcription start site region 110050
Tssr110051 11 88924580 to 88924597 17 - TSS region transcription start site region 110051
Tssr110052 11 88924604 to 88924615 11 - TSS region transcription start site region 110052
Tssr110053 11 88924632 to 88924643 11 - TSS region transcription start site region 110053
Tssr110054 11 88924699 to 88924710 11 - TSS region transcription start site region 110054
Tssr110055 11 88934233 to 88934237 4 - TSS region transcription start site region 110055
D11Mit370 11 88943117 to 88943263 146 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-370
Tssr104056 11 88950476 to 88950514 38 + TSS region transcription start site region 104056
Tssr104057 11 88954260 to 88954273 13 + TSS region transcription start site region 104057
Tssr110056 11 88954884 to 88954910 26 - TSS region transcription start site region 110056
Cpgi3522 11 88955193 to 88955671 478 CpG island CpG island 3522
Tssr110057 11 88955366 to 88955447 81 - TSS region transcription start site region 110057
Elobl 11 88964665 to 88966917 2252 - protein coding gene elongin B-like
Tssr110058 11 88966936 to 88966944 8 - TSS region transcription start site region 110058
Tssr104058 11 88970251 to 88970263 12 + TSS region transcription start site region 104058
Gm10367 11 88972375 to 88974160 1785 unclassified gene predicted gene 10367
2210409E12Rik 11 88972657 to 88973002 345 + pseudogene RIKEN cDNA 2210409E12 gene
Cpgi3523 11 88973746 to 88974671 925 CpG island CpG island 3523
Tssr104059 11 88973919 to 88973924 5 + TSS region transcription start site region 104059
Tssr104060 11 88973928 to 88973961 33 + TSS region transcription start site region 104060
Coil 11 88973935 to 88991613 17678 + protein coding gene coilin
Gm11496 11 88993040 to 88996544 3504 - lincRNA gene predicted gene 11496
Tssr110059 11 88994316 to 88994323 7 - TSS region transcription start site region 110059
Tssr104061 11 88994726 to 88994749 23 + TSS region transcription start site region 104061
Tssr110060 11 88995729 to 88995760 31 - TSS region transcription start site region 110060
Tssr110061 11 88996500 to 88996533 33 - TSS region transcription start site region 110061
Cpgi3524 11 88999097 to 89000096 999 CpG island CpG island 3524
Tssr104062 11 88999385 to 88999434 49 + TSS region transcription start site region 104062
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104063 11 88999442 to 88999479 37 + TSS region transcription start site region 104063
Tssr104064 11 89004771 to 89004783 12 + TSS region transcription start site region 104064
Tssr104065 11 89008116 to 89008129 13 + TSS region transcription start site region 104065
Tssr104066 11 89010893 to 89010909 16 + TSS region transcription start site region 104066
Tssr104067 11 89010969 to 89010977 8 + TSS region transcription start site region 104067
Tssr104068 11 89015528 to 89015556 28 + TSS region transcription start site region 104068
Tssr104069 11 89016877 to 89016893 16 + TSS region transcription start site region 104069
Tssr104070 11 89016933 to 89016948 15 + TSS region transcription start site region 104070
Tssr104071 11 89019479 to 89019501 22 + TSS region transcription start site region 104071
Tssr104072 11 89019608 to 89019620 12 + TSS region transcription start site region 104072
Tssr104073 11 89024511 to 89024525 14 + TSS region transcription start site region 104073
Tssr104074 11 89029392 to 89029431 39 + TSS region transcription start site region 104074
Dgke 11 89035185 to 89060757 25572 - protein coding gene diacylglycerol kinase, epsilon
Tssr110062 11 89048398 to 89048404 6 - TSS region transcription start site region 110062
Cpgi3525 11 89059909 to 89061001 1092 CpG island CpG island 3525
Tssr110063 11 89060528 to 89060588 60 - TSS region transcription start site region 110063
Tssr104075 11 89060625 to 89060639 14 + TSS region transcription start site region 104075
Tssr104076 11 89060667 to 89060672 5 + TSS region transcription start site region 104076
Tssr110064 11 89060697 to 89060799 102 - TSS region transcription start site region 110064
Tssr104077 11 89060732 to 89060754 22 + TSS region transcription start site region 104077
Dgkeos 11 89064729 to 89069098 4369 + antisense lncRNA gene diacylglycerol kinase, epsilon, opposite strand
Tssr104078 11 89065814 to 89065826 12 + TSS region transcription start site region 104078
Tssr104079 11 89065827 to 89065847 20 + TSS region transcription start site region 104079
Tssr104080 11 89065874 to 89065886 12 + TSS region transcription start site region 104080
Tssr104081 11 89066004 to 89066021 17 + TSS region transcription start site region 104081
Tssr104082 11 89066031 to 89066043 12 + TSS region transcription start site region 104082
Tssr104083 11 89066315 to 89066355 40 + TSS region transcription start site region 104083
Tssr104084 11 89066361 to 89066406 45 + TSS region transcription start site region 104084
Tssr104085 11 89066412 to 89066428 16 + TSS region transcription start site region 104085
Tssr104086 11 89066433 to 89066451 18 + TSS region transcription start site region 104086
Gm525 11 89073841 to 89093040 19199 + protein coding gene predicted gene 525
Tssr104087 11 89073921 to 89073934 13 + TSS region transcription start site region 104087
D11Mit41 11 89075978 to 89076112 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 41
Tssr110065 11 89077695 to 89077702 7 - TSS region transcription start site region 110065
Tssr3637 11 89078207 to 89078211 4 + TSS region transcription start site region 3637
Gm22534 11 89087048 to 89087151 103 - snRNA gene predicted gene, 22534
Tssr104088 11 89092282 to 89092293 11 + TSS region transcription start site region 104088
Tssr104089 11 89092299 to 89092316 17 + TSS region transcription start site region 104089
Tssr110066 11 89092921 to 89092926 5 - TSS region transcription start site region 110066
Tssr110067 11 89095269 to 89095284 15 - TSS region transcription start site region 110067
Gm38759 11 89121390 to 89124467 3077 + lncRNA gene predicted gene, 38759
Gm11497 11 89124456 to 89126706 2250 - lincRNA gene predicted gene 11497
Sbmd4 11 89128823 to 89128908 85 QTL spinal bone mineral density 4
D11Mit284 11 89128823 to 89128908 85 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 284
Gm24734 11 89136505 to 89136766 261 - unclassified non-coding RNA gene predicted gene, 24734