Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88676433-89006475

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
Msi2 11 88339382 to 88718267 378885 - protein coding gene musashi RNA-binding protein 2
Tssr110027 11 88689914 to 88689956 42 - TSS region transcription start site region 110027
Tssr110028 11 88694933 to 88694936 3 - TSS region transcription start site region 110028
Tssr110029 11 88702291 to 88702292 1 - TSS region transcription start site region 110029
Cpgi3518 11 88717700 to 88719130 1430 CpG island CpG island 3518
Tssr110030 11 88717791 to 88717838 47 - TSS region transcription start site region 110030
Tssr110031 11 88718048 to 88718059 11 - TSS region transcription start site region 110031
Tssr110032 11 88718078 to 88718104 26 - TSS region transcription start site region 110032
Tssr110033 11 88718136 to 88718161 25 - TSS region transcription start site region 110033
Tssr110034 11 88718165 to 88718196 31 - TSS region transcription start site region 110034
Tssr110035 11 88718223 to 88718294 71 - TSS region transcription start site region 110035
Tssr110036 11 88718296 to 88718310 14 - TSS region transcription start site region 110036
Tssr104050 11 88718442 to 88718504 62 + TSS region transcription start site region 104050
C030037D09Rik 11 88718643 to 88728572 9929 + lincRNA gene RIKEN cDNA C030037D09 gene
Tssr104051 11 88728061 to 88728076 15 + TSS region transcription start site region 104051
Gm11493 11 88741011 to 88743369 2358 - lincRNA gene predicted gene 11493
Cpgi3519 11 88778015 to 88778252 237 CpG island CpG island 3519
D11Mit212 11 88808762 to 88808902 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 212
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
Tssr110037 11 88827272 to 88827314 42 - TSS region transcription start site region 110037
Akap1 11 88830792 to 88864586 33794 - protein coding gene A kinase (PRKA) anchor protein 1
Tssr110038 11 88841433 to 88841475 42 - TSS region transcription start site region 110038
Tssr110039 11 88841476 to 88841491 15 - TSS region transcription start site region 110039
Tssr110040 11 88844434 to 88844454 20 - TSS region transcription start site region 110040
Tssr110041 11 88851462 to 88851522 60 - TSS region transcription start site region 110041
4930556N13Rik 11 88851604 to 88881395 29791 + antisense lncRNA gene RIKEN cDNA 4930556N13 gene
Tssr104052 11 88851620 to 88851623 3 + TSS region transcription start site region 104052
Tssr104053 11 88851641 to 88851652 11 + TSS region transcription start site region 104053
Cpgi3520 11 88863245 to 88865045 1800 CpG island CpG island 3520
Tssr110042 11 88863801 to 88863810 9 - TSS region transcription start site region 110042
Tssr110043 11 88863821 to 88863834 13 - TSS region transcription start site region 110043
Tssr110044 11 88864509 to 88864527 18 - TSS region transcription start site region 110044
Tssr110045 11 88864534 to 88864591 57 - TSS region transcription start site region 110045
Tssr104054 11 88864771 to 88864807 36 + TSS region transcription start site region 104054
Tssr110046 11 88877088 to 88877091 3 - TSS region transcription start site region 110046
Cpgi3521 11 88878245 to 88878487 242 CpG island CpG island 3521
Gm23507 11 88905121 to 88905227 106 + snRNA gene predicted gene, 23507
Tssr104055 11 88905925 to 88905938 13 + TSS region transcription start site region 104055
Scpep1os 11 88905928 to 88936061 30133 + antisense lncRNA gene serine carboxypeptidase 1, opposite strand
Scpep1 11 88924020 to 88955442 31422 - protein coding gene serine carboxypeptidase 1
Tssr110047 11 88924268 to 88924276 8 - TSS region transcription start site region 110047
Tssr110048 11 88924283 to 88924293 10 - TSS region transcription start site region 110048
Tssr110049 11 88924337 to 88924348 11 - TSS region transcription start site region 110049
Tssr110050 11 88924539 to 88924559 20 - TSS region transcription start site region 110050
Tssr110051 11 88924580 to 88924597 17 - TSS region transcription start site region 110051
Tssr110052 11 88924604 to 88924615 11 - TSS region transcription start site region 110052
Tssr110053 11 88924632 to 88924643 11 - TSS region transcription start site region 110053
Tssr110054 11 88924699 to 88924710 11 - TSS region transcription start site region 110054
Tssr110055 11 88934233 to 88934237 4 - TSS region transcription start site region 110055
D11Mit370 11 88943117 to 88943263 146 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-370
Tssr104056 11 88950476 to 88950514 38 + TSS region transcription start site region 104056
Tssr104057 11 88954260 to 88954273 13 + TSS region transcription start site region 104057
Tssr110056 11 88954884 to 88954910 26 - TSS region transcription start site region 110056
Cpgi3522 11 88955193 to 88955671 478 CpG island CpG island 3522
Tssr110057 11 88955366 to 88955447 81 - TSS region transcription start site region 110057
Elobl 11 88964665 to 88966917 2252 - protein coding gene elongin B-like
Tssr110058 11 88966936 to 88966944 8 - TSS region transcription start site region 110058
Tssr104058 11 88970251 to 88970263 12 + TSS region transcription start site region 104058
Gm10367 11 88972375 to 88974160 1785 unclassified gene predicted gene 10367
2210409E12Rik 11 88972657 to 88973002 345 + pseudogene RIKEN cDNA 2210409E12 gene
Cpgi3523 11 88973746 to 88974671 925 CpG island CpG island 3523
Tssr104059 11 88973919 to 88973924 5 + TSS region transcription start site region 104059
Tssr104060 11 88973928 to 88973961 33 + TSS region transcription start site region 104060
Coil 11 88973935 to 88991613 17678 + protein coding gene coilin
Gm11496 11 88993040 to 88996544 3504 - lincRNA gene predicted gene 11496
Tssr110059 11 88994316 to 88994323 7 - TSS region transcription start site region 110059
Tssr104061 11 88994726 to 88994749 23 + TSS region transcription start site region 104061
Tssr110060 11 88995729 to 88995760 31 - TSS region transcription start site region 110060
Tssr110061 11 88996500 to 88996533 33 - TSS region transcription start site region 110061
Cpgi3524 11 88999097 to 89000096 999 CpG island CpG island 3524
Tssr104062 11 88999385 to 88999434 49 + TSS region transcription start site region 104062
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104063 11 88999442 to 88999479 37 + TSS region transcription start site region 104063
Tssr104064 11 89004771 to 89004783 12 + TSS region transcription start site region 104064