Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88220629-89030661

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
Tssr104043 11 88222236 to 88222245 9 + TSS region transcription start site region 104043
Tssr110003 11 88235244 to 88235250 6 - TSS region transcription start site region 110003
Cpgi3515 11 88252108 to 88252438 330 CpG island CpG island 3515
Tssr104044 11 88253353 to 88253379 26 + TSS region transcription start site region 104044
Gm38534 11 88253368 to 88256990 3622 + lincRNA gene predicted gene, 38534
Gm34366 11 88273425 to 88274584 1159 + lncRNA gene predicted gene, 34366
Tssr104045 11 88294046 to 88294073 27 + TSS region transcription start site region 104045
Ccdc182 11 88294058 to 88295261 1203 + protein coding gene coiled-coil domain containing 182
Cpgi3516 11 88294221 to 88294640 419 CpG island CpG island 3516
Gm11509 11 88335660 to 88335984 324 + pseudogene predicted gene 11509
Msi2 11 88339382 to 88718267 378885 - protein coding gene musashi RNA-binding protein 2
Tssr110004 11 88340437 to 88340459 22 - TSS region transcription start site region 110004
Tssr110005 11 88340693 to 88340706 13 - TSS region transcription start site region 110005
Tssr110006 11 88341916 to 88341918 2 - TSS region transcription start site region 110006
Tssr110007 11 88342555 to 88342572 17 - TSS region transcription start site region 110007
Tssr110008 11 88342905 to 88342915 10 - TSS region transcription start site region 110008
Tssr110009 11 88343414 to 88343418 4 - TSS region transcription start site region 110009
Tssr110010 11 88344247 to 88344260 13 - TSS region transcription start site region 110010
Cpgi3517 11 88348812 to 88348975 163 CpG island CpG island 3517
Tssr110011 11 88349196 to 88349200 4 - TSS region transcription start site region 110011
Mir378b 11 88352773 to 88352864 91 + miRNA gene microRNA 378b
Gm15893 11 88356291 to 88363947 7656 + antisense lncRNA gene predicted gene 15893
Tssr104046 11 88357166 to 88357181 15 + TSS region transcription start site region 104046
Tssr110012 11 88366948 to 88366955 7 - TSS region transcription start site region 110012
Tssr110013 11 88366972 to 88366983 11 - TSS region transcription start site region 110013
Tssr110014 11 88394668 to 88394679 11 - TSS region transcription start site region 110014
4931406E20Rik 11 88396513 to 88398419 1906 unclassified gene RIKEN cDNA 4931406E20 gene
Tssr110015 11 88428865 to 88428867 2 - TSS region transcription start site region 110015
Gm11510 11 88432986 to 88433514 528 - pseudogene predicted gene 11510
Tssr110016 11 88456722 to 88456727 5 - TSS region transcription start site region 110016
6720454L07Rik 11 88531596 to 88533502 1906 unclassified gene RIKEN cDNA 6720454L07 gene
Tssr110017 11 88540453 to 88540468 15 - TSS region transcription start site region 110017
Tssr110018 11 88541635 to 88541646 11 - TSS region transcription start site region 110018
Tssr110019 11 88551163 to 88551176 13 - TSS region transcription start site region 110019
Tssr110020 11 88552558 to 88552566 8 - TSS region transcription start site region 110020
Tssr110021 11 88552589 to 88552599 10 - TSS region transcription start site region 110021
Tssr110022 11 88611028 to 88611046 18 - TSS region transcription start site region 110022
0610039H22Rik 11 88619251 to 88623426 4175 + lncRNA gene RIKEN cDNA 0610039H22 gene
Tssr104047 11 88619701 to 88619711 10 + TSS region transcription start site region 104047
Tssr110023 11 88622805 to 88622809 4 - TSS region transcription start site region 110023
Tssr104048 11 88624926 to 88624949 23 + TSS region transcription start site region 104048
Tssr104049 11 88625003 to 88625017 14 + TSS region transcription start site region 104049
Tssr110024 11 88625629 to 88625661 32 - TSS region transcription start site region 110024
Tssr110025 11 88631555 to 88631557 2 - TSS region transcription start site region 110025
Tssr110026 11 88643548 to 88643552 4 - TSS region transcription start site region 110026
Tssr110027 11 88689914 to 88689956 42 - TSS region transcription start site region 110027
Tssr110028 11 88694933 to 88694936 3 - TSS region transcription start site region 110028
Tssr110029 11 88702291 to 88702292 1 - TSS region transcription start site region 110029
Cpgi3518 11 88717700 to 88719130 1430 CpG island CpG island 3518
Tssr110030 11 88717791 to 88717838 47 - TSS region transcription start site region 110030
Tssr110031 11 88718048 to 88718059 11 - TSS region transcription start site region 110031
Tssr110032 11 88718078 to 88718104 26 - TSS region transcription start site region 110032
Tssr110033 11 88718136 to 88718161 25 - TSS region transcription start site region 110033
Tssr110034 11 88718165 to 88718196 31 - TSS region transcription start site region 110034
Tssr110035 11 88718223 to 88718294 71 - TSS region transcription start site region 110035
Tssr110036 11 88718296 to 88718310 14 - TSS region transcription start site region 110036
Tssr104050 11 88718442 to 88718504 62 + TSS region transcription start site region 104050
C030037D09Rik 11 88718643 to 88728572 9929 + lincRNA gene RIKEN cDNA C030037D09 gene
Tssr104051 11 88728061 to 88728076 15 + TSS region transcription start site region 104051
Gm11493 11 88741011 to 88743369 2358 - lincRNA gene predicted gene 11493
Cpgi3519 11 88778015 to 88778252 237 CpG island CpG island 3519
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
D11Mit212 11 88808762 to 88808902 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 212
Tssr110037 11 88827272 to 88827314 42 - TSS region transcription start site region 110037
Akap1 11 88830792 to 88864586 33794 - protein coding gene A kinase (PRKA) anchor protein 1
Tssr110038 11 88841433 to 88841475 42 - TSS region transcription start site region 110038
Tssr110039 11 88841476 to 88841491 15 - TSS region transcription start site region 110039
Tssr110040 11 88844434 to 88844454 20 - TSS region transcription start site region 110040
Tssr110041 11 88851462 to 88851522 60 - TSS region transcription start site region 110041
4930556N13Rik 11 88851604 to 88881395 29791 + antisense lncRNA gene RIKEN cDNA 4930556N13 gene
Tssr104052 11 88851620 to 88851623 3 + TSS region transcription start site region 104052
Tssr104053 11 88851641 to 88851652 11 + TSS region transcription start site region 104053
Cpgi3520 11 88863245 to 88865045 1800 CpG island CpG island 3520
Tssr110042 11 88863801 to 88863810 9 - TSS region transcription start site region 110042
Tssr110043 11 88863821 to 88863834 13 - TSS region transcription start site region 110043
Tssr110044 11 88864509 to 88864527 18 - TSS region transcription start site region 110044
Tssr110045 11 88864534 to 88864591 57 - TSS region transcription start site region 110045
Tssr104054 11 88864771 to 88864807 36 + TSS region transcription start site region 104054
Tssr110046 11 88877088 to 88877091 3 - TSS region transcription start site region 110046
Cpgi3521 11 88878245 to 88878487 242 CpG island CpG island 3521
Gm23507 11 88905121 to 88905227 106 + snRNA gene predicted gene, 23507
Tssr104055 11 88905925 to 88905938 13 + TSS region transcription start site region 104055
Scpep1os 11 88905928 to 88936061 30133 + antisense lncRNA gene serine carboxypeptidase 1, opposite strand
Scpep1 11 88924020 to 88955442 31422 - protein coding gene serine carboxypeptidase 1
Tssr110047 11 88924268 to 88924276 8 - TSS region transcription start site region 110047
Tssr110048 11 88924283 to 88924293 10 - TSS region transcription start site region 110048
Tssr110049 11 88924337 to 88924348 11 - TSS region transcription start site region 110049
Tssr110050 11 88924539 to 88924559 20 - TSS region transcription start site region 110050
Tssr110051 11 88924580 to 88924597 17 - TSS region transcription start site region 110051
Tssr110052 11 88924604 to 88924615 11 - TSS region transcription start site region 110052
Tssr110053 11 88924632 to 88924643 11 - TSS region transcription start site region 110053
Tssr110054 11 88924699 to 88924710 11 - TSS region transcription start site region 110054
Tssr110055 11 88934233 to 88934237 4 - TSS region transcription start site region 110055
D11Mit370 11 88943117 to 88943263 146 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-370
Tssr104056 11 88950476 to 88950514 38 + TSS region transcription start site region 104056
Tssr104057 11 88954260 to 88954273 13 + TSS region transcription start site region 104057
Tssr110056 11 88954884 to 88954910 26 - TSS region transcription start site region 110056
Cpgi3522 11 88955193 to 88955671 478 CpG island CpG island 3522
Tssr110057 11 88955366 to 88955447 81 - TSS region transcription start site region 110057
Elobl 11 88964665 to 88966917 2252 - protein coding gene elongin B-like
Tssr110058 11 88966936 to 88966944 8 - TSS region transcription start site region 110058
Tssr104058 11 88970251 to 88970263 12 + TSS region transcription start site region 104058
Gm10367 11 88972375 to 88974160 1785 unclassified gene predicted gene 10367
2210409E12Rik 11 88972657 to 88973002 345 + pseudogene RIKEN cDNA 2210409E12 gene
Cpgi3523 11 88973746 to 88974671 925 CpG island CpG island 3523
Tssr104059 11 88973919 to 88973924 5 + TSS region transcription start site region 104059
Tssr104060 11 88973928 to 88973961 33 + TSS region transcription start site region 104060
Coil 11 88973935 to 88991613 17678 + protein coding gene coilin
Gm11496 11 88993040 to 88996544 3504 - lincRNA gene predicted gene 11496
Tssr110059 11 88994316 to 88994323 7 - TSS region transcription start site region 110059
Tssr104061 11 88994726 to 88994749 23 + TSS region transcription start site region 104061
Tssr110060 11 88995729 to 88995760 31 - TSS region transcription start site region 110060
Tssr110061 11 88996500 to 88996533 33 - TSS region transcription start site region 110061
Cpgi3524 11 88999097 to 89000096 999 CpG island CpG island 3524
Tssr104062 11 88999385 to 88999434 49 + TSS region transcription start site region 104062
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104063 11 88999442 to 88999479 37 + TSS region transcription start site region 104063
Tssr104064 11 89004771 to 89004783 12 + TSS region transcription start site region 104064
Tssr104065 11 89008116 to 89008129 13 + TSS region transcription start site region 104065
Tssr104066 11 89010893 to 89010909 16 + TSS region transcription start site region 104066
Tssr104067 11 89010969 to 89010977 8 + TSS region transcription start site region 104067
Tssr104068 11 89015528 to 89015556 28 + TSS region transcription start site region 104068
Tssr104069 11 89016877 to 89016893 16 + TSS region transcription start site region 104069
Tssr104070 11 89016933 to 89016948 15 + TSS region transcription start site region 104070
Tssr104071 11 89019479 to 89019501 22 + TSS region transcription start site region 104071
Tssr104072 11 89019608 to 89019620 12 + TSS region transcription start site region 104072
Tssr104073 11 89024511 to 89024525 14 + TSS region transcription start site region 104073
Tssr104074 11 89029392 to 89029431 39 + TSS region transcription start site region 104074