Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88022986-88843514

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
Gm11508 11 88011991 to 88048006 36015 - antisense lncRNA gene predicted gene 11508
Tssr109999 11 88026733 to 88026737 4 - TSS region transcription start site region 109999
2010015M23Rik 11 88039578 to 88047360 7782 - lincRNA gene RIKEN cDNA 2010015M23 gene
Cpgi3506 11 88047134 to 88048731 1597 CpG island CpG island 3506
Tssr104012 11 88047302 to 88047346 44 + TSS region transcription start site region 104012
Srsf1 11 88047373 to 88053755 6382 + protein coding gene serine/arginine-rich splicing factor 1
Tssr104013 11 88047660 to 88047690 30 + TSS region transcription start site region 104013
Tssr104014 11 88047693 to 88047727 34 + TSS region transcription start site region 104014
Tssr104015 11 88047788 to 88047832 44 + TSS region transcription start site region 104015
Tssr110000 11 88048284 to 88048345 61 - TSS region transcription start site region 110000
Tssr110001 11 88049067 to 88049080 13 - TSS region transcription start site region 110001
Tssr104016 11 88049407 to 88049421 14 + TSS region transcription start site region 104016
Tssr104017 11 88049541 to 88049604 63 + TSS region transcription start site region 104017
Tssr104018 11 88051156 to 88051169 13 + TSS region transcription start site region 104018
Tssr104019 11 88055861 to 88055864 3 + TSS region transcription start site region 104019
Gm15892 11 88059066 to 88067476 8410 + lincRNA gene predicted gene 15892
Cpgi3507 11 88067621 to 88069362 1741 CpG island CpG island 3507
Tssr104020 11 88067674 to 88067703 29 + TSS region transcription start site region 104020
Tssr104021 11 88068067 to 88068131 64 + TSS region transcription start site region 104021
Tssr104022 11 88068242 to 88068289 47 + TSS region transcription start site region 104022
Vezf1 11 88068279 to 88084729 16450 + protein coding gene vascular endothelial zinc finger 1
Tssr104023 11 88068301 to 88068315 14 + TSS region transcription start site region 104023
Tssr104024 11 88068316 to 88068332 16 + TSS region transcription start site region 104024
Tssr104025 11 88068379 to 88068385 6 + TSS region transcription start site region 104025
Tssr104026 11 88068540 to 88068571 31 + TSS region transcription start site region 104026
D11Mit196.1 11 88076810 to 88076952 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 196.1
2210416O15Rik 11 88098058 to 88100107 2049 + lncRNA gene RIKEN cDNA 2210416O15 gene
Cpgi3508 11 88098658 to 88100031 1373 CpG island CpG island 3508
Tssr104027 11 88098939 to 88098950 11 + TSS region transcription start site region 104027
Cuedc1 11 88099146 to 88194140 94994 + protein coding gene CUE domain containing 1
Tssr104028 11 88099156 to 88099181 25 + TSS region transcription start site region 104028
Tssr104029 11 88099203 to 88099254 51 + TSS region transcription start site region 104029
Tssr104030 11 88099284 to 88099311 27 + TSS region transcription start site region 104030
Tssr104031 11 88105372 to 88105376 4 + TSS region transcription start site region 104031
Tssr110002 11 88118879 to 88118909 30 - TSS region transcription start site region 110002
Cpgi3509 11 88139279 to 88139466 187 CpG island CpG island 3509
Tssr104032 11 88142541 to 88142568 27 + TSS region transcription start site region 104032
Tssr104033 11 88155835 to 88155837 2 + TSS region transcription start site region 104033
Tssr104034 11 88160579 to 88160587 8 + TSS region transcription start site region 104034
Cpgi3510 11 88161157 to 88161812 655 CpG island CpG island 3510
Tssr104035 11 88162379 to 88162386 7 + TSS region transcription start site region 104035
Tssr104036 11 88164904 to 88164919 15 + TSS region transcription start site region 104036
Cpgi3511 11 88169588 to 88170190 602 CpG island CpG island 3511
Cpgi3512 11 88187670 to 88188152 482 CpG island CpG island 3512
Tssr104037 11 88192749 to 88192769 20 + TSS region transcription start site region 104037
Cpgi3513 11 88193419 to 88193924 505 CpG island CpG island 3513
Tssr104038 11 88201424 to 88201435 11 + TSS region transcription start site region 104038
Tssr104039 11 88201441 to 88201456 15 + TSS region transcription start site region 104039
Cpgi3514 11 88203810 to 88204926 1116 CpG island CpG island 3514
Tssr104040 11 88204015 to 88204039 24 + TSS region transcription start site region 104040
Tssr104041 11 88204380 to 88204391 11 + TSS region transcription start site region 104041
Mrps23 11 88204388 to 88211507 7119 + protein coding gene mitochondrial ribosomal protein S23
Tssr104042 11 88204396 to 88204437 41 + TSS region transcription start site region 104042
Tssr104043 11 88222236 to 88222245 9 + TSS region transcription start site region 104043
Tssr110003 11 88235244 to 88235250 6 - TSS region transcription start site region 110003
Cpgi3515 11 88252108 to 88252438 330 CpG island CpG island 3515
Tssr104044 11 88253353 to 88253379 26 + TSS region transcription start site region 104044
Gm38534 11 88253368 to 88256990 3622 + lincRNA gene predicted gene, 38534
Gm34366 11 88273425 to 88274584 1159 + lncRNA gene predicted gene, 34366
Tssr104045 11 88294046 to 88294073 27 + TSS region transcription start site region 104045
Ccdc182 11 88294058 to 88295261 1203 + protein coding gene coiled-coil domain containing 182
Cpgi3516 11 88294221 to 88294640 419 CpG island CpG island 3516
Gm11509 11 88335660 to 88335984 324 + pseudogene predicted gene 11509
Msi2 11 88339382 to 88718267 378885 - protein coding gene musashi RNA-binding protein 2
Tssr110004 11 88340437 to 88340459 22 - TSS region transcription start site region 110004
Tssr110005 11 88340693 to 88340706 13 - TSS region transcription start site region 110005
Tssr110006 11 88341916 to 88341918 2 - TSS region transcription start site region 110006
Tssr110007 11 88342555 to 88342572 17 - TSS region transcription start site region 110007
Tssr110008 11 88342905 to 88342915 10 - TSS region transcription start site region 110008
Tssr110009 11 88343414 to 88343418 4 - TSS region transcription start site region 110009
Tssr110010 11 88344247 to 88344260 13 - TSS region transcription start site region 110010
Cpgi3517 11 88348812 to 88348975 163 CpG island CpG island 3517
Tssr110011 11 88349196 to 88349200 4 - TSS region transcription start site region 110011
Mir378b 11 88352773 to 88352864 91 + miRNA gene microRNA 378b
Gm15893 11 88356291 to 88363947 7656 + antisense lncRNA gene predicted gene 15893
Tssr104046 11 88357166 to 88357181 15 + TSS region transcription start site region 104046
Tssr110012 11 88366948 to 88366955 7 - TSS region transcription start site region 110012
Tssr110013 11 88366972 to 88366983 11 - TSS region transcription start site region 110013
Tssr110014 11 88394668 to 88394679 11 - TSS region transcription start site region 110014
4931406E20Rik 11 88396513 to 88398419 1906 unclassified gene RIKEN cDNA 4931406E20 gene
Tssr110015 11 88428865 to 88428867 2 - TSS region transcription start site region 110015
Gm11510 11 88432986 to 88433514 528 - pseudogene predicted gene 11510
Tssr110016 11 88456722 to 88456727 5 - TSS region transcription start site region 110016
6720454L07Rik 11 88531596 to 88533502 1906 unclassified gene RIKEN cDNA 6720454L07 gene
Tssr110017 11 88540453 to 88540468 15 - TSS region transcription start site region 110017
Tssr110018 11 88541635 to 88541646 11 - TSS region transcription start site region 110018
Tssr110019 11 88551163 to 88551176 13 - TSS region transcription start site region 110019
Tssr110020 11 88552558 to 88552566 8 - TSS region transcription start site region 110020
Tssr110021 11 88552589 to 88552599 10 - TSS region transcription start site region 110021
Tssr110022 11 88611028 to 88611046 18 - TSS region transcription start site region 110022
0610039H22Rik 11 88619251 to 88623426 4175 + lncRNA gene RIKEN cDNA 0610039H22 gene
Tssr104047 11 88619701 to 88619711 10 + TSS region transcription start site region 104047
Tssr110023 11 88622805 to 88622809 4 - TSS region transcription start site region 110023
Tssr104048 11 88624926 to 88624949 23 + TSS region transcription start site region 104048
Tssr104049 11 88625003 to 88625017 14 + TSS region transcription start site region 104049
Tssr110024 11 88625629 to 88625661 32 - TSS region transcription start site region 110024
Tssr110025 11 88631555 to 88631557 2 - TSS region transcription start site region 110025
Tssr110026 11 88643548 to 88643552 4 - TSS region transcription start site region 110026
Tssr110027 11 88689914 to 88689956 42 - TSS region transcription start site region 110027
Tssr110028 11 88694933 to 88694936 3 - TSS region transcription start site region 110028
Tssr110029 11 88702291 to 88702292 1 - TSS region transcription start site region 110029
Cpgi3518 11 88717700 to 88719130 1430 CpG island CpG island 3518
Tssr110030 11 88717791 to 88717838 47 - TSS region transcription start site region 110030
Tssr110031 11 88718048 to 88718059 11 - TSS region transcription start site region 110031
Tssr110032 11 88718078 to 88718104 26 - TSS region transcription start site region 110032
Tssr110033 11 88718136 to 88718161 25 - TSS region transcription start site region 110033
Tssr110034 11 88718165 to 88718196 31 - TSS region transcription start site region 110034
Tssr110035 11 88718223 to 88718294 71 - TSS region transcription start site region 110035
Tssr110036 11 88718296 to 88718310 14 - TSS region transcription start site region 110036
Tssr104050 11 88718442 to 88718504 62 + TSS region transcription start site region 104050
C030037D09Rik 11 88718643 to 88728572 9929 + lincRNA gene RIKEN cDNA C030037D09 gene
Tssr104051 11 88728061 to 88728076 15 + TSS region transcription start site region 104051
Gm11493 11 88741011 to 88743369 2358 - lincRNA gene predicted gene 11493
Cpgi3519 11 88778015 to 88778252 237 CpG island CpG island 3519
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
D11Mit212 11 88808762 to 88808902 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 212
Tssr110037 11 88827272 to 88827314 42 - TSS region transcription start site region 110037
Akap1 11 88830792 to 88864586 33794 - protein coding gene A kinase (PRKA) anchor protein 1
Tssr110038 11 88841433 to 88841475 42 - TSS region transcription start site region 110038
Tssr110039 11 88841476 to 88841491 15 - TSS region transcription start site region 110039