Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87943289-88053300

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11507 11 87944403 to 87944814 411 + pseudogene predicted gene 11507
Dynll2 11 87979525 to 87987533 8008 - protein coding gene dynein light chain LC8-type 2
Tssr109989 11 87979755 to 87979773 18 - TSS region transcription start site region 109989
Tssr109990 11 87980434 to 87980445 11 - TSS region transcription start site region 109990
Tssr109991 11 87980470 to 87980492 22 - TSS region transcription start site region 109991
Tssr109992 11 87980940 to 87980957 17 - TSS region transcription start site region 109992
Tssr109993 11 87984276 to 87984279 3 - TSS region transcription start site region 109993
Tssr104011 11 87986634 to 87986638 4 + TSS region transcription start site region 104011
Cpgi3505 11 87986641 to 87987930 1289 CpG island CpG island 3505
Tssr109994 11 87987476 to 87987487 11 - TSS region transcription start site region 109994
Tssr109995 11 87987495 to 87987512 17 - TSS region transcription start site region 109995
Tssr109996 11 87987528 to 87987537 9 - TSS region transcription start site region 109996
Tssr109997 11 87998271 to 87998285 14 - TSS region transcription start site region 109997
Tssr109998 11 87998289 to 87998300 11 - TSS region transcription start site region 109998
Gm38610 11 88005298 to 88007152 1854 + lncRNA gene predicted gene, 38610
Gm11508 11 88011991 to 88048006 36015 - antisense lncRNA gene predicted gene 11508
Tssr109999 11 88026733 to 88026737 4 - TSS region transcription start site region 109999
2010015M23Rik 11 88039578 to 88047360 7782 - lincRNA gene RIKEN cDNA 2010015M23 gene
Cpgi3506 11 88047134 to 88048731 1597 CpG island CpG island 3506
Tssr104012 11 88047302 to 88047346 44 + TSS region transcription start site region 104012
Srsf1 11 88047373 to 88053755 6382 + protein coding gene serine/arginine-rich splicing factor 1
Tssr104013 11 88047660 to 88047690 30 + TSS region transcription start site region 104013
Tssr104014 11 88047693 to 88047727 34 + TSS region transcription start site region 104014
Tssr104015 11 88047788 to 88047832 44 + TSS region transcription start site region 104015
Tssr110000 11 88048284 to 88048345 61 - TSS region transcription start site region 110000
Tssr110001 11 88049067 to 88049080 13 - TSS region transcription start site region 110001
Tssr104016 11 88049407 to 88049421 14 + TSS region transcription start site region 104016
Tssr104017 11 88049541 to 88049604 63 + TSS region transcription start site region 104017
Tssr104018 11 88051156 to 88051169 13 + TSS region transcription start site region 104018