Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87797724-88039056

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2 11 58617204 to 87804412 29187208 QTL immunity to S. typhimurium 2
Mpo 11 87793784 to 87804412 10628 + protein coding gene myeloperoxidase
Gm11505 11 87795784 to 87801144 5360 - antisense lncRNA gene predicted gene 11505
Tssr104006 11 87799889 to 87799900 11 + TSS region transcription start site region 104006
Tssr3634 11 87799906 to 87799921 15 - TSS region transcription start site region 3634
Tssr104007 11 87799972 to 87799984 12 + TSS region transcription start site region 104007
Pcyts3 11 87800372 to 87800540 168 QTL plasmacytoma susceptibility 3
Sle13 11 87800372 to 87800540 168 QTL systematic lupus erythematosus susceptibility 13
Nilac2 11 87800372 to 87800540 168 QTL nicotine induced locomotor activity 2
D11Mit39 11 87800372 to 87800540 168 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 39
Rafar 11 87800372 to 87800540 168 QTL retinoic acid induced forelimb autopod reduction
Tssr3635 11 87801017 to 87801023 6 + TSS region transcription start site region 3635
Tssr104008 11 87801041 to 87801051 10 + TSS region transcription start site region 104008
Tssr109981 11 87801092 to 87801109 17 - TSS region transcription start site region 109981
Tssr104009 11 87801216 to 87801262 46 + TSS region transcription start site region 104009
Cpgi3501 11 87802523 to 87802845 322 CpG island CpG island 3501
Lpo 11 87806428 to 87826119 19691 - protein coding gene lactoperoxidase
Tssr109982 11 87814322 to 87814335 13 - TSS region transcription start site region 109982
Cpgi3502 11 87817037 to 87817528 491 CpG island CpG island 3502
Tssr109983 11 87825772 to 87825789 17 - TSS region transcription start site region 109983
Tssr109984 11 87825938 to 87825941 3 - TSS region transcription start site region 109984
Tssr109985 11 87826023 to 87826039 16 - TSS region transcription start site region 109985
Tssr109986 11 87828309 to 87828324 15 - TSS region transcription start site region 109986
Tssr109987 11 87828335 to 87828348 13 - TSS region transcription start site region 109987
Cpgi3503 11 87852975 to 87853638 663 CpG island CpG island 3503
Tssr104010 11 87853207 to 87853249 42 + TSS region transcription start site region 104010
Mks1 11 87853215 to 87863803 10588 + protein coding gene Meckel syndrome, type 1
Epx 11 87864000 to 87875536 11536 - protein coding gene eosinophil peroxidase
Cpgi3504 11 87868501 to 87868741 240 CpG island CpG island 3504
Tssr109988 11 87875524 to 87875534 10 - TSS region transcription start site region 109988
Olfr462 11 87888959 to 87889894 935 - protein coding gene olfactory receptor 462
D11Mit341 11 87892609 to 87892706 97 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-341
Olfr463 11 87892987 to 87893922 935 - protein coding gene olfactory receptor 463
Olfr464 11 87913920 to 87915003 1083 - protein coding gene olfactory receptor 464
Gm46263 11 87917724 to 87919056 1332 - lncRNA gene predicted gene, 46263
Tssr3636 11 87931946 to 87931950 4 + TSS region transcription start site region 3636
Gm11504 11 87931987 to 87932159 172 + pseudogene predicted gene 11504
Gm11507 11 87944403 to 87944814 411 + pseudogene predicted gene 11507
Dynll2 11 87979525 to 87987533 8008 - protein coding gene dynein light chain LC8-type 2
Tssr109989 11 87979755 to 87979773 18 - TSS region transcription start site region 109989
Tssr109990 11 87980434 to 87980445 11 - TSS region transcription start site region 109990
Tssr109991 11 87980470 to 87980492 22 - TSS region transcription start site region 109991
Tssr109992 11 87980940 to 87980957 17 - TSS region transcription start site region 109992
Tssr109993 11 87984276 to 87984279 3 - TSS region transcription start site region 109993
Tssr104011 11 87986634 to 87986638 4 + TSS region transcription start site region 104011
Cpgi3505 11 87986641 to 87987930 1289 CpG island CpG island 3505
Tssr109994 11 87987476 to 87987487 11 - TSS region transcription start site region 109994
Tssr109995 11 87987495 to 87987512 17 - TSS region transcription start site region 109995
Tssr109996 11 87987528 to 87987537 9 - TSS region transcription start site region 109996
Tssr109997 11 87998271 to 87998285 14 - TSS region transcription start site region 109997
Tssr109998 11 87998289 to 87998300 11 - TSS region transcription start site region 109998
Gm38610 11 88005298 to 88007152 1854 + lncRNA gene predicted gene, 38610
Gm11508 11 88011991 to 88048006 36015 - antisense lncRNA gene predicted gene 11508
Tssr109999 11 88026733 to 88026737 4 - TSS region transcription start site region 109999
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1