Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87778939-88418950

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2 11 58617204 to 87804412 29187208 QTL immunity to S. typhimurium 2
Tspoap1 11 87760541 to 87785928 25387 + protein coding gene TSPO associated protein 1
Cpgi3500 11 87778119 to 87779165 1046 CpG island CpG island 3500
Gm34064 11 87783349 to 87795187 11838 - lncRNA gene predicted gene, 34064
Tssr103978 11 87793406 to 87793415 9 + TSS region transcription start site region 103978
Tssr103979 11 87793432 to 87793445 13 + TSS region transcription start site region 103979
Tssr103980 11 87793470 to 87793483 13 + TSS region transcription start site region 103980
Tssr103981 11 87793722 to 87793805 83 + TSS region transcription start site region 103981
Dp(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 chromosomal duplication duplication, Chr 11, Bradley 18
Del(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 cytogenetic marker deletion, Chr 11, Bradley 18
Mpo 11 87793784 to 87804412 10628 + protein coding gene myeloperoxidase
Tssr103982 11 87793809 to 87793828 19 + TSS region transcription start site region 103982
Tssr103983 11 87793831 to 87793847 16 + TSS region transcription start site region 103983
Tssr103984 11 87794019 to 87794032 13 + TSS region transcription start site region 103984
Tssr103985 11 87794043 to 87794057 14 + TSS region transcription start site region 103985
Tssr103986 11 87794059 to 87794071 12 + TSS region transcription start site region 103986
Tssr103987 11 87794206 to 87794212 6 + TSS region transcription start site region 103987
Tssr103988 11 87794521 to 87794536 15 + TSS region transcription start site region 103988
Tssr3631 11 87794750 to 87794768 18 + TSS region transcription start site region 3631
Tssr103989 11 87794779 to 87794815 36 + TSS region transcription start site region 103989
Tssr103990 11 87795213 to 87795227 14 + TSS region transcription start site region 103990
Tssr3632 11 87795262 to 87795268 6 + TSS region transcription start site region 3632
Tssr103991 11 87795286 to 87795300 14 + TSS region transcription start site region 103991
Tssr103992 11 87795307 to 87795318 11 + TSS region transcription start site region 103992
Tssr103993 11 87795783 to 87795792 9 + TSS region transcription start site region 103993
Gm11505 11 87795784 to 87801144 5360 - antisense lncRNA gene predicted gene 11505
Tssr103994 11 87795855 to 87795874 19 + TSS region transcription start site region 103994
Tssr103995 11 87796031 to 87796043 12 + TSS region transcription start site region 103995
Tssr103996 11 87796083 to 87796093 10 + TSS region transcription start site region 103996
Tssr103997 11 87796253 to 87796263 10 + TSS region transcription start site region 103997
Tssr3633 11 87796313 to 87796339 26 + TSS region transcription start site region 3633
Tssr103998 11 87796360 to 87796408 48 + TSS region transcription start site region 103998
Tssr109976 11 87796421 to 87796434 13 - TSS region transcription start site region 109976
Tssr103999 11 87797316 to 87797331 15 + TSS region transcription start site region 103999
Tssr109977 11 87797345 to 87797370 25 - TSS region transcription start site region 109977
Tssr109978 11 87797373 to 87797380 7 - TSS region transcription start site region 109978
Tssr109979 11 87797425 to 87797447 22 - TSS region transcription start site region 109979
Tssr104000 11 87797428 to 87797445 17 + TSS region transcription start site region 104000
Tssr104001 11 87797458 to 87797471 13 + TSS region transcription start site region 104001
Tssr104002 11 87797484 to 87797493 9 + TSS region transcription start site region 104002
Tssr104003 11 87797557 to 87797568 11 + TSS region transcription start site region 104003
Tssr104004 11 87797583 to 87797590 7 + TSS region transcription start site region 104004
Tssr104005 11 87797607 to 87797617 10 + TSS region transcription start site region 104005
Tssr109980 11 87797613 to 87797622 9 - TSS region transcription start site region 109980
Tssr104006 11 87799889 to 87799900 11 + TSS region transcription start site region 104006
Tssr3634 11 87799906 to 87799921 15 - TSS region transcription start site region 3634
Tssr104007 11 87799972 to 87799984 12 + TSS region transcription start site region 104007
D11Mit39 11 87800372 to 87800540 168 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 39
Nilac2 11 87800372 to 87800540 168 QTL nicotine induced locomotor activity 2
Rafar 11 87800372 to 87800540 168 QTL retinoic acid induced forelimb autopod reduction
Sle13 11 87800372 to 87800540 168 QTL systematic lupus erythematosus susceptibility 13
Pcyts3 11 87800372 to 87800540 168 QTL plasmacytoma susceptibility 3
Tssr3635 11 87801017 to 87801023 6 + TSS region transcription start site region 3635
Tssr104008 11 87801041 to 87801051 10 + TSS region transcription start site region 104008
Tssr109981 11 87801092 to 87801109 17 - TSS region transcription start site region 109981
Tssr104009 11 87801216 to 87801262 46 + TSS region transcription start site region 104009
Cpgi3501 11 87802523 to 87802845 322 CpG island CpG island 3501
Lpo 11 87806428 to 87826119 19691 - protein coding gene lactoperoxidase
Tssr109982 11 87814322 to 87814335 13 - TSS region transcription start site region 109982
Cpgi3502 11 87817037 to 87817528 491 CpG island CpG island 3502
Tssr109983 11 87825772 to 87825789 17 - TSS region transcription start site region 109983
Tssr109984 11 87825938 to 87825941 3 - TSS region transcription start site region 109984
Tssr109985 11 87826023 to 87826039 16 - TSS region transcription start site region 109985
Tssr109986 11 87828309 to 87828324 15 - TSS region transcription start site region 109986
Tssr109987 11 87828335 to 87828348 13 - TSS region transcription start site region 109987
Cpgi3503 11 87852975 to 87853638 663 CpG island CpG island 3503
Tssr104010 11 87853207 to 87853249 42 + TSS region transcription start site region 104010
Mks1 11 87853215 to 87863803 10588 + protein coding gene Meckel syndrome, type 1
Epx 11 87864000 to 87875536 11536 - protein coding gene eosinophil peroxidase
Cpgi3504 11 87868501 to 87868741 240 CpG island CpG island 3504
Tssr109988 11 87875524 to 87875534 10 - TSS region transcription start site region 109988
Olfr462 11 87888959 to 87889894 935 - protein coding gene olfactory receptor 462
D11Mit341 11 87892609 to 87892706 97 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-341
Olfr463 11 87892987 to 87893922 935 - protein coding gene olfactory receptor 463
Olfr464 11 87913920 to 87915003 1083 - protein coding gene olfactory receptor 464
Gm46263 11 87917724 to 87919056 1332 - lncRNA gene predicted gene, 46263
Tssr3636 11 87931946 to 87931950 4 + TSS region transcription start site region 3636
Gm11504 11 87931987 to 87932159 172 + pseudogene predicted gene 11504
Gm11507 11 87944403 to 87944814 411 + pseudogene predicted gene 11507
Dynll2 11 87979525 to 87987533 8008 - protein coding gene dynein light chain LC8-type 2
Tssr109989 11 87979755 to 87979773 18 - TSS region transcription start site region 109989
Tssr109990 11 87980434 to 87980445 11 - TSS region transcription start site region 109990
Tssr109991 11 87980470 to 87980492 22 - TSS region transcription start site region 109991
Tssr109992 11 87980940 to 87980957 17 - TSS region transcription start site region 109992
Tssr109993 11 87984276 to 87984279 3 - TSS region transcription start site region 109993
Tssr104011 11 87986634 to 87986638 4 + TSS region transcription start site region 104011
Cpgi3505 11 87986641 to 87987930 1289 CpG island CpG island 3505
Tssr109994 11 87987476 to 87987487 11 - TSS region transcription start site region 109994
Tssr109995 11 87987495 to 87987512 17 - TSS region transcription start site region 109995
Tssr109996 11 87987528 to 87987537 9 - TSS region transcription start site region 109996
Tssr109997 11 87998271 to 87998285 14 - TSS region transcription start site region 109997
Tssr109998 11 87998289 to 87998300 11 - TSS region transcription start site region 109998
Gm38610 11 88005298 to 88007152 1854 + lncRNA gene predicted gene, 38610
Gm11508 11 88011991 to 88048006 36015 - antisense lncRNA gene predicted gene 11508
Tssr109999 11 88026733 to 88026737 4 - TSS region transcription start site region 109999
2010015M23Rik 11 88039578 to 88047360 7782 - lincRNA gene RIKEN cDNA 2010015M23 gene
Cpgi3506 11 88047134 to 88048731 1597 CpG island CpG island 3506
Tssr104012 11 88047302 to 88047346 44 + TSS region transcription start site region 104012
Srsf1 11 88047373 to 88053755 6382 + protein coding gene serine/arginine-rich splicing factor 1
Tssr104013 11 88047660 to 88047690 30 + TSS region transcription start site region 104013
Tssr104014 11 88047693 to 88047727 34 + TSS region transcription start site region 104014
Tssr104015 11 88047788 to 88047832 44 + TSS region transcription start site region 104015
Tssr110000 11 88048284 to 88048345 61 - TSS region transcription start site region 110000
Tssr110001 11 88049067 to 88049080 13 - TSS region transcription start site region 110001
Tssr104016 11 88049407 to 88049421 14 + TSS region transcription start site region 104016
Tssr104017 11 88049541 to 88049604 63 + TSS region transcription start site region 104017
Tssr104018 11 88051156 to 88051169 13 + TSS region transcription start site region 104018
Tssr104019 11 88055861 to 88055864 3 + TSS region transcription start site region 104019
Gm15892 11 88059066 to 88067476 8410 + lincRNA gene predicted gene 15892
Cpgi3507 11 88067621 to 88069362 1741 CpG island CpG island 3507
Tssr104020 11 88067674 to 88067703 29 + TSS region transcription start site region 104020
Tssr104021 11 88068067 to 88068131 64 + TSS region transcription start site region 104021
Tssr104022 11 88068242 to 88068289 47 + TSS region transcription start site region 104022
Vezf1 11 88068279 to 88084729 16450 + protein coding gene vascular endothelial zinc finger 1
Tssr104023 11 88068301 to 88068315 14 + TSS region transcription start site region 104023
Tssr104024 11 88068316 to 88068332 16 + TSS region transcription start site region 104024
Tssr104025 11 88068379 to 88068385 6 + TSS region transcription start site region 104025
Tssr104026 11 88068540 to 88068571 31 + TSS region transcription start site region 104026
D11Mit196.1 11 88076810 to 88076952 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 196.1
2210416O15Rik 11 88098058 to 88100107 2049 + lncRNA gene RIKEN cDNA 2210416O15 gene
Cpgi3508 11 88098658 to 88100031 1373 CpG island CpG island 3508
Tssr104027 11 88098939 to 88098950 11 + TSS region transcription start site region 104027
Cuedc1 11 88099146 to 88194140 94994 + protein coding gene CUE domain containing 1
Tssr104028 11 88099156 to 88099181 25 + TSS region transcription start site region 104028
Tssr104029 11 88099203 to 88099254 51 + TSS region transcription start site region 104029
Tssr104030 11 88099284 to 88099311 27 + TSS region transcription start site region 104030
Tssr104031 11 88105372 to 88105376 4 + TSS region transcription start site region 104031
Tssr110002 11 88118879 to 88118909 30 - TSS region transcription start site region 110002
Cpgi3509 11 88139279 to 88139466 187 CpG island CpG island 3509
Tssr104032 11 88142541 to 88142568 27 + TSS region transcription start site region 104032
Tssr104033 11 88155835 to 88155837 2 + TSS region transcription start site region 104033
Tssr104034 11 88160579 to 88160587 8 + TSS region transcription start site region 104034
Cpgi3510 11 88161157 to 88161812 655 CpG island CpG island 3510
Tssr104035 11 88162379 to 88162386 7 + TSS region transcription start site region 104035
Tssr104036 11 88164904 to 88164919 15 + TSS region transcription start site region 104036
Cpgi3511 11 88169588 to 88170190 602 CpG island CpG island 3511
Cpgi3512 11 88187670 to 88188152 482 CpG island CpG island 3512
Tssr104037 11 88192749 to 88192769 20 + TSS region transcription start site region 104037
Cpgi3513 11 88193419 to 88193924 505 CpG island CpG island 3513
Tssr104038 11 88201424 to 88201435 11 + TSS region transcription start site region 104038
Tssr104039 11 88201441 to 88201456 15 + TSS region transcription start site region 104039
Cpgi3514 11 88203810 to 88204926 1116 CpG island CpG island 3514
Tssr104040 11 88204015 to 88204039 24 + TSS region transcription start site region 104040
Tssr104041 11 88204380 to 88204391 11 + TSS region transcription start site region 104041
Mrps23 11 88204388 to 88211507 7119 + protein coding gene mitochondrial ribosomal protein S23
Tssr104042 11 88204396 to 88204437 41 + TSS region transcription start site region 104042
Tssr104043 11 88222236 to 88222245 9 + TSS region transcription start site region 104043
Tssr110003 11 88235244 to 88235250 6 - TSS region transcription start site region 110003
Cpgi3515 11 88252108 to 88252438 330 CpG island CpG island 3515
Tssr104044 11 88253353 to 88253379 26 + TSS region transcription start site region 104044
Gm38534 11 88253368 to 88256990 3622 + lincRNA gene predicted gene, 38534
Gm34366 11 88273425 to 88274584 1159 + lncRNA gene predicted gene, 34366
Tssr104045 11 88294046 to 88294073 27 + TSS region transcription start site region 104045
Ccdc182 11 88294058 to 88295261 1203 + protein coding gene coiled-coil domain containing 182
Cpgi3516 11 88294221 to 88294640 419 CpG island CpG island 3516
Gm11509 11 88335660 to 88335984 324 + pseudogene predicted gene 11509
Msi2 11 88339382 to 88718267 378885 - protein coding gene musashi RNA-binding protein 2
Tssr110004 11 88340437 to 88340459 22 - TSS region transcription start site region 110004
Tssr110005 11 88340693 to 88340706 13 - TSS region transcription start site region 110005
Tssr110006 11 88341916 to 88341918 2 - TSS region transcription start site region 110006
Tssr110007 11 88342555 to 88342572 17 - TSS region transcription start site region 110007
Tssr110008 11 88342905 to 88342915 10 - TSS region transcription start site region 110008
Tssr110009 11 88343414 to 88343418 4 - TSS region transcription start site region 110009
Tssr110010 11 88344247 to 88344260 13 - TSS region transcription start site region 110010
Cpgi3517 11 88348812 to 88348975 163 CpG island CpG island 3517
Tssr110011 11 88349196 to 88349200 4 - TSS region transcription start site region 110011
Mir378b 11 88352773 to 88352864 91 + miRNA gene microRNA 378b
Gm15893 11 88356291 to 88363947 7656 + antisense lncRNA gene predicted gene 15893
Tssr104046 11 88357166 to 88357181 15 + TSS region transcription start site region 104046
Tssr110012 11 88366948 to 88366955 7 - TSS region transcription start site region 110012
Tssr110013 11 88366972 to 88366983 11 - TSS region transcription start site region 110013
Tssr110014 11 88394668 to 88394679 11 - TSS region transcription start site region 110014
4931406E20Rik 11 88396513 to 88398419 1906 unclassified gene RIKEN cDNA 4931406E20 gene
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1