Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:8769024-9080221

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr100313 11 8773623 to 8773635 12 + TSS region transcription start site region 100313
Tssr100314 11 8773637 to 8773646 9 + TSS region transcription start site region 100314
Gm36772 11 8796577 to 8799607 3030 - lncRNA gene predicted gene, 36772
Gm11990 11 8805955 to 8806725 770 - pseudogene predicted gene 11990
Pkd1l1 11 8826708 to 8973266 146558 - protein coding gene polycystic kidney disease 1 like 1
Gm40815 11 8884173 to 8885303 1130 + pseudogene predicted gene, 40815
Gm11991 11 8884223 to 8885296 1073 - pseudogene predicted gene 11991
Tssr106850 11 8903717 to 8903727 10 - TSS region transcription start site region 106850
D11Mit226 11 8904955 to 8905093 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 226
Gm40814 11 8921301 to 8927994 6693 + protein coding gene predicted gene, 40814
Gm46271 11 8924024 to 8925221 1197 + lncRNA gene predicted gene, 46271
Hus1 11 8993137 to 9011191 18054 - protein coding gene HUS1 checkpoint clamp component
Tssr100315 11 9010675 to 9010709 34 + TSS region transcription start site region 100315
Cpgi2576 11 9010829 to 9011330 501 CpG island CpG island 2576
Tssr106851 11 9011111 to 9011164 53 - TSS region transcription start site region 106851
Sun3 11 9016054 to 9048991 32937 - protein coding gene Sad1 and UNC84 domain containing 3
Skull15 11 9026225 to 9026374 149 QTL skull morphology 15
Lmr6 11 9026225 to 9026374 149 QTL leishmaniasis resistance 6
Tshp9 11 9026225 to 9026374 149 QTL tooth shape 9
D11Mit62 11 9026225 to 9026374 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 62
Tssr106852 11 9039579 to 9039584 5 - TSS region transcription start site region 106852
Tssr106853 11 9039585 to 9039601 16 - TSS region transcription start site region 106853
Tssr106854 11 9039618 to 9039625 7 - TSS region transcription start site region 106854
Cpgi2577 11 9048390 to 9049190 800 CpG island CpG island 2577
Tssr106855 11 9048473 to 9048489 16 - TSS region transcription start site region 106855
Tssr106856 11 9048493 to 9048511 18 - TSS region transcription start site region 106856
Tssr106857 11 9048514 to 9048521 7 - TSS region transcription start site region 106857
Tssr100316 11 9048575 to 9048630 55 + TSS region transcription start site region 100316
Gm11992 11 9048592 to 9069354 20762 + protein coding gene predicted gene 11992
Tssr100317 11 9048698 to 9048711 13 + TSS region transcription start site region 100317
Tssr100318 11 9048829 to 9048839 10 + TSS region transcription start site region 100318
Tssr3422 11 9049033 to 9049043 10 + TSS region transcription start site region 3422
Tssr100319 11 9049047 to 9049061 14 + TSS region transcription start site region 100319
Tssr100320 11 9049069 to 9049082 13 + TSS region transcription start site region 100320
Tssr100321 11 9049098 to 9049110 12 + TSS region transcription start site region 100321