Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87656841-87856955

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2 11 58617204 to 87804412 29187208 QTL immunity to S. typhimurium 2
Hsf5 11 87617164 to 87659542 42378 + protein coding gene heat shock transcription factor family member 5
Tssr103952 11 87657621 to 87657626 5 + TSS region transcription start site region 103952
Tssr103953 11 87662618 to 87662680 62 + TSS region transcription start site region 103953
Tssr103954 11 87662685 to 87662699 14 + TSS region transcription start site region 103954
Tssr3628 11 87662716 to 87662727 11 + TSS region transcription start site region 3628
Rnf43 11 87663087 to 87735539 72452 + protein coding gene ring finger protein 43
Tssr3629 11 87687730 to 87687733 3 + TSS region transcription start site region 3629
Gm25968 11 87694482 to 87694581 99 - snRNA gene predicted gene, 25968
Tssr103955 11 87699895 to 87699914 19 + TSS region transcription start site region 103955
1110028F11Rik 11 87701396 to 87705331 3935 + sense intronic lncRNA gene RIKEN cDNA 1110028F11 gene
Tssr3630 11 87719655 to 87719660 5 - TSS region transcription start site region 3630
Tssr109968 11 87734628 to 87734639 11 - TSS region transcription start site region 109968
Cpgi3496 11 87736718 to 87737993 1275 CpG island CpG island 3496
Tssr103956 11 87737530 to 87737566 36 + TSS region transcription start site region 103956
Supt4a 11 87737552 to 87743623 6071 + protein coding gene suppressor of Ty 4A
Tssr103957 11 87737576 to 87737593 17 + TSS region transcription start site region 103957
Tssr103958 11 87745193 to 87745205 12 + TSS region transcription start site region 103958
Tssr109969 11 87748808 to 87748837 29 - TSS region transcription start site region 109969
Tssr109970 11 87748844 to 87748860 16 - TSS region transcription start site region 109970
Tssr103959 11 87748954 to 87748969 15 + TSS region transcription start site region 103959
Tssr109971 11 87749406 to 87749423 17 - TSS region transcription start site region 109971
Tssr109972 11 87749458 to 87749487 29 - TSS region transcription start site region 109972
Tssr103960 11 87749732 to 87749751 19 + TSS region transcription start site region 103960
Tssr103961 11 87749878 to 87749901 23 + TSS region transcription start site region 103961
Tssr103962 11 87751191 to 87751216 25 + TSS region transcription start site region 103962
Tssr109973 11 87751614 to 87751633 19 - TSS region transcription start site region 109973
Tssr109974 11 87751684 to 87751705 21 - TSS region transcription start site region 109974
Tssr103963 11 87751792 to 87751810 18 + TSS region transcription start site region 103963
Tssr103964 11 87751819 to 87751843 24 + TSS region transcription start site region 103964
Tssr103965 11 87751908 to 87751924 16 + TSS region transcription start site region 103965
Tssr103966 11 87754860 to 87754871 11 + TSS region transcription start site region 103966
Tssr103967 11 87755567 to 87755588 21 + TSS region transcription start site region 103967
Mir142hg 11 87755577 to 87757270 1693 + lincRNA gene Mir142 host gene (non-protein coding)
Tssr103968 11 87755889 to 87755901 12 + TSS region transcription start site region 103968
Tssr103969 11 87756631 to 87756635 4 + TSS region transcription start site region 103969
Tssr103970 11 87756789 to 87756826 37 + TSS region transcription start site region 103970
Cpgi3497 11 87756804 to 87757353 549 CpG island CpG island 3497
Mir142b 11 87756841 to 87756955 114 - miRNA gene microRNA 142b
Mir142 11 87756864 to 87756927 63 + miRNA gene microRNA 142
Tssr103971 11 87756925 to 87756929 4 + TSS region transcription start site region 103971
Tssr109975 11 87757265 to 87757269 4 - TSS region transcription start site region 109975
Tssr103972 11 87760533 to 87760551 18 + TSS region transcription start site region 103972
Tspoap1 11 87760541 to 87785928 25387 + protein coding gene TSPO associated protein 1
Cpgi3498 11 87760702 to 87760864 162 CpG island CpG island 3498
Tssr103973 11 87760898 to 87760903 5 + TSS region transcription start site region 103973
Tssr103974 11 87761062 to 87761067 5 + TSS region transcription start site region 103974
Tssr103975 11 87762048 to 87762069 21 + TSS region transcription start site region 103975
Cpgi3499 11 87763490 to 87765066 1576 CpG island CpG island 3499
Tssr103976 11 87764702 to 87764732 30 + TSS region transcription start site region 103976
Tssr103977 11 87774471 to 87774472 1 + TSS region transcription start site region 103977
Cpgi3500 11 87778119 to 87779165 1046 CpG island CpG island 3500
Gm34064 11 87783349 to 87795187 11838 - lncRNA gene predicted gene, 34064
Tssr103978 11 87793406 to 87793415 9 + TSS region transcription start site region 103978
Tssr103979 11 87793432 to 87793445 13 + TSS region transcription start site region 103979
Tssr103980 11 87793470 to 87793483 13 + TSS region transcription start site region 103980
Tssr103981 11 87793722 to 87793805 83 + TSS region transcription start site region 103981
Dp(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 chromosomal duplication duplication, Chr 11, Bradley 18
Del(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 cytogenetic marker deletion, Chr 11, Bradley 18
Mpo 11 87793784 to 87804412 10628 + protein coding gene myeloperoxidase
Tssr103982 11 87793809 to 87793828 19 + TSS region transcription start site region 103982
Tssr103983 11 87793831 to 87793847 16 + TSS region transcription start site region 103983
Tssr103984 11 87794019 to 87794032 13 + TSS region transcription start site region 103984
Tssr103985 11 87794043 to 87794057 14 + TSS region transcription start site region 103985
Tssr103986 11 87794059 to 87794071 12 + TSS region transcription start site region 103986
Tssr103987 11 87794206 to 87794212 6 + TSS region transcription start site region 103987
Tssr103988 11 87794521 to 87794536 15 + TSS region transcription start site region 103988
Tssr3631 11 87794750 to 87794768 18 + TSS region transcription start site region 3631
Tssr103989 11 87794779 to 87794815 36 + TSS region transcription start site region 103989
Tssr103990 11 87795213 to 87795227 14 + TSS region transcription start site region 103990
Tssr3632 11 87795262 to 87795268 6 + TSS region transcription start site region 3632
Tssr103991 11 87795286 to 87795300 14 + TSS region transcription start site region 103991
Tssr103992 11 87795307 to 87795318 11 + TSS region transcription start site region 103992
Tssr103993 11 87795783 to 87795792 9 + TSS region transcription start site region 103993
Gm11505 11 87795784 to 87801144 5360 - antisense lncRNA gene predicted gene 11505
Tssr103994 11 87795855 to 87795874 19 + TSS region transcription start site region 103994
Tssr103995 11 87796031 to 87796043 12 + TSS region transcription start site region 103995
Tssr103996 11 87796083 to 87796093 10 + TSS region transcription start site region 103996
Tssr103997 11 87796253 to 87796263 10 + TSS region transcription start site region 103997
Tssr3633 11 87796313 to 87796339 26 + TSS region transcription start site region 3633
Tssr103998 11 87796360 to 87796408 48 + TSS region transcription start site region 103998
Tssr109976 11 87796421 to 87796434 13 - TSS region transcription start site region 109976
Tssr103999 11 87797316 to 87797331 15 + TSS region transcription start site region 103999
Tssr109977 11 87797345 to 87797370 25 - TSS region transcription start site region 109977
Tssr109978 11 87797373 to 87797380 7 - TSS region transcription start site region 109978
Tssr109979 11 87797425 to 87797447 22 - TSS region transcription start site region 109979
Tssr104000 11 87797428 to 87797445 17 + TSS region transcription start site region 104000
Tssr104001 11 87797458 to 87797471 13 + TSS region transcription start site region 104001
Tssr104002 11 87797484 to 87797493 9 + TSS region transcription start site region 104002
Tssr104003 11 87797557 to 87797568 11 + TSS region transcription start site region 104003
Tssr104004 11 87797583 to 87797590 7 + TSS region transcription start site region 104004
Tssr104005 11 87797607 to 87797617 10 + TSS region transcription start site region 104005
Tssr109980 11 87797613 to 87797622 9 - TSS region transcription start site region 109980
Tssr104006 11 87799889 to 87799900 11 + TSS region transcription start site region 104006
Tssr3634 11 87799906 to 87799921 15 - TSS region transcription start site region 3634
Tssr104007 11 87799972 to 87799984 12 + TSS region transcription start site region 104007
Sle13 11 87800372 to 87800540 168 QTL systematic lupus erythematosus susceptibility 13
Nilac2 11 87800372 to 87800540 168 QTL nicotine induced locomotor activity 2
D11Mit39 11 87800372 to 87800540 168 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 39
Rafar 11 87800372 to 87800540 168 QTL retinoic acid induced forelimb autopod reduction
Pcyts3 11 87800372 to 87800540 168 QTL plasmacytoma susceptibility 3
Tssr3635 11 87801017 to 87801023 6 + TSS region transcription start site region 3635
Tssr104008 11 87801041 to 87801051 10 + TSS region transcription start site region 104008
Tssr109981 11 87801092 to 87801109 17 - TSS region transcription start site region 109981
Tssr104009 11 87801216 to 87801262 46 + TSS region transcription start site region 104009
Cpgi3501 11 87802523 to 87802845 322 CpG island CpG island 3501
Lpo 11 87806428 to 87826119 19691 - protein coding gene lactoperoxidase
Tssr109982 11 87814322 to 87814335 13 - TSS region transcription start site region 109982
Cpgi3502 11 87817037 to 87817528 491 CpG island CpG island 3502
Tssr109983 11 87825772 to 87825789 17 - TSS region transcription start site region 109983
Tssr109984 11 87825938 to 87825941 3 - TSS region transcription start site region 109984
Tssr109985 11 87826023 to 87826039 16 - TSS region transcription start site region 109985
Tssr109986 11 87828309 to 87828324 15 - TSS region transcription start site region 109986
Tssr109987 11 87828335 to 87828348 13 - TSS region transcription start site region 109987
Cpgi3503 11 87852975 to 87853638 663 CpG island CpG island 3503
Tssr104010 11 87853207 to 87853249 42 + TSS region transcription start site region 104010
Mks1 11 87853215 to 87863803 10588 + protein coding gene Meckel syndrome, type 1
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1