Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87633215-88083803

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2 11 58617204 to 87804412 29187208 QTL immunity to S. typhimurium 2
Hsf5 11 87617164 to 87659542 42378 + protein coding gene heat shock transcription factor family member 5
Cpgi3495 11 87639116 to 87639552 436 CpG island CpG island 3495
Tssr103952 11 87657621 to 87657626 5 + TSS region transcription start site region 103952
Tssr103953 11 87662618 to 87662680 62 + TSS region transcription start site region 103953
Tssr103954 11 87662685 to 87662699 14 + TSS region transcription start site region 103954
Tssr3628 11 87662716 to 87662727 11 + TSS region transcription start site region 3628
Rnf43 11 87663087 to 87735539 72452 + protein coding gene ring finger protein 43
Tssr3629 11 87687730 to 87687733 3 + TSS region transcription start site region 3629
Gm25968 11 87694482 to 87694581 99 - snRNA gene predicted gene, 25968
Tssr103955 11 87699895 to 87699914 19 + TSS region transcription start site region 103955
1110028F11Rik 11 87701396 to 87705331 3935 + sense intronic lncRNA gene RIKEN cDNA 1110028F11 gene
Tssr3630 11 87719655 to 87719660 5 - TSS region transcription start site region 3630
Tssr109968 11 87734628 to 87734639 11 - TSS region transcription start site region 109968
Cpgi3496 11 87736718 to 87737993 1275 CpG island CpG island 3496
Tssr103956 11 87737530 to 87737566 36 + TSS region transcription start site region 103956
Supt4a 11 87737552 to 87743623 6071 + protein coding gene suppressor of Ty 4A
Tssr103957 11 87737576 to 87737593 17 + TSS region transcription start site region 103957
Tssr103958 11 87745193 to 87745205 12 + TSS region transcription start site region 103958
Tssr109969 11 87748808 to 87748837 29 - TSS region transcription start site region 109969
Tssr109970 11 87748844 to 87748860 16 - TSS region transcription start site region 109970
Tssr103959 11 87748954 to 87748969 15 + TSS region transcription start site region 103959
Tssr109971 11 87749406 to 87749423 17 - TSS region transcription start site region 109971
Tssr109972 11 87749458 to 87749487 29 - TSS region transcription start site region 109972
Tssr103960 11 87749732 to 87749751 19 + TSS region transcription start site region 103960
Tssr103961 11 87749878 to 87749901 23 + TSS region transcription start site region 103961
Tssr103962 11 87751191 to 87751216 25 + TSS region transcription start site region 103962
Tssr109973 11 87751614 to 87751633 19 - TSS region transcription start site region 109973
Tssr109974 11 87751684 to 87751705 21 - TSS region transcription start site region 109974
Tssr103963 11 87751792 to 87751810 18 + TSS region transcription start site region 103963
Tssr103964 11 87751819 to 87751843 24 + TSS region transcription start site region 103964
Tssr103965 11 87751908 to 87751924 16 + TSS region transcription start site region 103965
Tssr103966 11 87754860 to 87754871 11 + TSS region transcription start site region 103966
Tssr103967 11 87755567 to 87755588 21 + TSS region transcription start site region 103967
Mir142hg 11 87755577 to 87757270 1693 + lincRNA gene Mir142 host gene (non-protein coding)
Tssr103968 11 87755889 to 87755901 12 + TSS region transcription start site region 103968
Tssr103969 11 87756631 to 87756635 4 + TSS region transcription start site region 103969
Tssr103970 11 87756789 to 87756826 37 + TSS region transcription start site region 103970
Cpgi3497 11 87756804 to 87757353 549 CpG island CpG island 3497
Mir142b 11 87756841 to 87756955 114 - miRNA gene microRNA 142b
Mir142 11 87756864 to 87756927 63 + miRNA gene microRNA 142
Tssr103971 11 87756925 to 87756929 4 + TSS region transcription start site region 103971
Tssr109975 11 87757265 to 87757269 4 - TSS region transcription start site region 109975
Tssr103972 11 87760533 to 87760551 18 + TSS region transcription start site region 103972
Tspoap1 11 87760541 to 87785928 25387 + protein coding gene TSPO associated protein 1
Cpgi3498 11 87760702 to 87760864 162 CpG island CpG island 3498
Tssr103973 11 87760898 to 87760903 5 + TSS region transcription start site region 103973
Tssr103974 11 87761062 to 87761067 5 + TSS region transcription start site region 103974
Tssr103975 11 87762048 to 87762069 21 + TSS region transcription start site region 103975
Cpgi3499 11 87763490 to 87765066 1576 CpG island CpG island 3499
Tssr103976 11 87764702 to 87764732 30 + TSS region transcription start site region 103976
Tssr103977 11 87774471 to 87774472 1 + TSS region transcription start site region 103977
Cpgi3500 11 87778119 to 87779165 1046 CpG island CpG island 3500
Gm34064 11 87783349 to 87795187 11838 - lncRNA gene predicted gene, 34064
Tssr103978 11 87793406 to 87793415 9 + TSS region transcription start site region 103978
Tssr103979 11 87793432 to 87793445 13 + TSS region transcription start site region 103979
Tssr103980 11 87793470 to 87793483 13 + TSS region transcription start site region 103980
Tssr103981 11 87793722 to 87793805 83 + TSS region transcription start site region 103981
Del(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 cytogenetic marker deletion, Chr 11, Bradley 18
Dp(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 chromosomal duplication duplication, Chr 11, Bradley 18
Mpo 11 87793784 to 87804412 10628 + protein coding gene myeloperoxidase
Tssr103982 11 87793809 to 87793828 19 + TSS region transcription start site region 103982
Tssr103983 11 87793831 to 87793847 16 + TSS region transcription start site region 103983
Tssr103984 11 87794019 to 87794032 13 + TSS region transcription start site region 103984
Tssr103985 11 87794043 to 87794057 14 + TSS region transcription start site region 103985
Tssr103986 11 87794059 to 87794071 12 + TSS region transcription start site region 103986
Tssr103987 11 87794206 to 87794212 6 + TSS region transcription start site region 103987
Tssr103988 11 87794521 to 87794536 15 + TSS region transcription start site region 103988
Tssr3631 11 87794750 to 87794768 18 + TSS region transcription start site region 3631
Tssr103989 11 87794779 to 87794815 36 + TSS region transcription start site region 103989
Tssr103990 11 87795213 to 87795227 14 + TSS region transcription start site region 103990
Tssr3632 11 87795262 to 87795268 6 + TSS region transcription start site region 3632
Tssr103991 11 87795286 to 87795300 14 + TSS region transcription start site region 103991
Tssr103992 11 87795307 to 87795318 11 + TSS region transcription start site region 103992
Tssr103993 11 87795783 to 87795792 9 + TSS region transcription start site region 103993
Gm11505 11 87795784 to 87801144 5360 - antisense lncRNA gene predicted gene 11505
Tssr103994 11 87795855 to 87795874 19 + TSS region transcription start site region 103994
Tssr103995 11 87796031 to 87796043 12 + TSS region transcription start site region 103995
Tssr103996 11 87796083 to 87796093 10 + TSS region transcription start site region 103996
Tssr103997 11 87796253 to 87796263 10 + TSS region transcription start site region 103997
Tssr3633 11 87796313 to 87796339 26 + TSS region transcription start site region 3633
Tssr103998 11 87796360 to 87796408 48 + TSS region transcription start site region 103998
Tssr109976 11 87796421 to 87796434 13 - TSS region transcription start site region 109976
Tssr103999 11 87797316 to 87797331 15 + TSS region transcription start site region 103999
Tssr109977 11 87797345 to 87797370 25 - TSS region transcription start site region 109977
Tssr109978 11 87797373 to 87797380 7 - TSS region transcription start site region 109978
Tssr109979 11 87797425 to 87797447 22 - TSS region transcription start site region 109979
Tssr104000 11 87797428 to 87797445 17 + TSS region transcription start site region 104000
Tssr104001 11 87797458 to 87797471 13 + TSS region transcription start site region 104001
Tssr104002 11 87797484 to 87797493 9 + TSS region transcription start site region 104002
Tssr104003 11 87797557 to 87797568 11 + TSS region transcription start site region 104003
Tssr104004 11 87797583 to 87797590 7 + TSS region transcription start site region 104004
Tssr104005 11 87797607 to 87797617 10 + TSS region transcription start site region 104005
Tssr109980 11 87797613 to 87797622 9 - TSS region transcription start site region 109980
Tssr104006 11 87799889 to 87799900 11 + TSS region transcription start site region 104006
Tssr3634 11 87799906 to 87799921 15 - TSS region transcription start site region 3634
Tssr104007 11 87799972 to 87799984 12 + TSS region transcription start site region 104007
Sle13 11 87800372 to 87800540 168 QTL systematic lupus erythematosus susceptibility 13
Pcyts3 11 87800372 to 87800540 168 QTL plasmacytoma susceptibility 3
D11Mit39 11 87800372 to 87800540 168 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 39
Nilac2 11 87800372 to 87800540 168 QTL nicotine induced locomotor activity 2
Rafar 11 87800372 to 87800540 168 QTL retinoic acid induced forelimb autopod reduction
Tssr3635 11 87801017 to 87801023 6 + TSS region transcription start site region 3635
Tssr104008 11 87801041 to 87801051 10 + TSS region transcription start site region 104008
Tssr109981 11 87801092 to 87801109 17 - TSS region transcription start site region 109981
Tssr104009 11 87801216 to 87801262 46 + TSS region transcription start site region 104009
Cpgi3501 11 87802523 to 87802845 322 CpG island CpG island 3501
Lpo 11 87806428 to 87826119 19691 - protein coding gene lactoperoxidase
Tssr109982 11 87814322 to 87814335 13 - TSS region transcription start site region 109982
Cpgi3502 11 87817037 to 87817528 491 CpG island CpG island 3502
Tssr109983 11 87825772 to 87825789 17 - TSS region transcription start site region 109983
Tssr109984 11 87825938 to 87825941 3 - TSS region transcription start site region 109984
Tssr109985 11 87826023 to 87826039 16 - TSS region transcription start site region 109985
Tssr109986 11 87828309 to 87828324 15 - TSS region transcription start site region 109986
Tssr109987 11 87828335 to 87828348 13 - TSS region transcription start site region 109987
Cpgi3503 11 87852975 to 87853638 663 CpG island CpG island 3503
Tssr104010 11 87853207 to 87853249 42 + TSS region transcription start site region 104010
Mks1 11 87853215 to 87863803 10588 + protein coding gene Meckel syndrome, type 1
Epx 11 87864000 to 87875536 11536 - protein coding gene eosinophil peroxidase
Cpgi3504 11 87868501 to 87868741 240 CpG island CpG island 3504
Tssr109988 11 87875524 to 87875534 10 - TSS region transcription start site region 109988
Olfr462 11 87888959 to 87889894 935 - protein coding gene olfactory receptor 462
D11Mit341 11 87892609 to 87892706 97 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-341
Olfr463 11 87892987 to 87893922 935 - protein coding gene olfactory receptor 463
Olfr464 11 87913920 to 87915003 1083 - protein coding gene olfactory receptor 464
Gm46263 11 87917724 to 87919056 1332 - lncRNA gene predicted gene, 46263
Tssr3636 11 87931946 to 87931950 4 + TSS region transcription start site region 3636
Gm11504 11 87931987 to 87932159 172 + pseudogene predicted gene 11504
Gm11507 11 87944403 to 87944814 411 + pseudogene predicted gene 11507
Dynll2 11 87979525 to 87987533 8008 - protein coding gene dynein light chain LC8-type 2
Tssr109989 11 87979755 to 87979773 18 - TSS region transcription start site region 109989
Tssr109990 11 87980434 to 87980445 11 - TSS region transcription start site region 109990
Tssr109991 11 87980470 to 87980492 22 - TSS region transcription start site region 109991
Tssr109992 11 87980940 to 87980957 17 - TSS region transcription start site region 109992
Tssr109993 11 87984276 to 87984279 3 - TSS region transcription start site region 109993
Tssr104011 11 87986634 to 87986638 4 + TSS region transcription start site region 104011
Cpgi3505 11 87986641 to 87987930 1289 CpG island CpG island 3505
Tssr109994 11 87987476 to 87987487 11 - TSS region transcription start site region 109994
Tssr109995 11 87987495 to 87987512 17 - TSS region transcription start site region 109995
Tssr109996 11 87987528 to 87987537 9 - TSS region transcription start site region 109996
Tssr109997 11 87998271 to 87998285 14 - TSS region transcription start site region 109997
Tssr109998 11 87998289 to 87998300 11 - TSS region transcription start site region 109998
Gm38610 11 88005298 to 88007152 1854 + lncRNA gene predicted gene, 38610
Gm11508 11 88011991 to 88048006 36015 - antisense lncRNA gene predicted gene 11508
Tssr109999 11 88026733 to 88026737 4 - TSS region transcription start site region 109999
2010015M23Rik 11 88039578 to 88047360 7782 - lincRNA gene RIKEN cDNA 2010015M23 gene
Cpgi3506 11 88047134 to 88048731 1597 CpG island CpG island 3506
Tssr104012 11 88047302 to 88047346 44 + TSS region transcription start site region 104012
Srsf1 11 88047373 to 88053755 6382 + protein coding gene serine/arginine-rich splicing factor 1
Tssr104013 11 88047660 to 88047690 30 + TSS region transcription start site region 104013
Tssr104014 11 88047693 to 88047727 34 + TSS region transcription start site region 104014
Tssr104015 11 88047788 to 88047832 44 + TSS region transcription start site region 104015
Tssr110000 11 88048284 to 88048345 61 - TSS region transcription start site region 110000
Tssr110001 11 88049067 to 88049080 13 - TSS region transcription start site region 110001
Tssr104016 11 88049407 to 88049421 14 + TSS region transcription start site region 104016
Tssr104017 11 88049541 to 88049604 63 + TSS region transcription start site region 104017
Tssr104018 11 88051156 to 88051169 13 + TSS region transcription start site region 104018
Tssr104019 11 88055861 to 88055864 3 + TSS region transcription start site region 104019
Gm15892 11 88059066 to 88067476 8410 + lincRNA gene predicted gene 15892
Cpgi3507 11 88067621 to 88069362 1741 CpG island CpG island 3507
Tssr104020 11 88067674 to 88067703 29 + TSS region transcription start site region 104020
Tssr104021 11 88068067 to 88068131 64 + TSS region transcription start site region 104021
Tssr104022 11 88068242 to 88068289 47 + TSS region transcription start site region 104022
Vezf1 11 88068279 to 88084729 16450 + protein coding gene vascular endothelial zinc finger 1
Tssr104023 11 88068301 to 88068315 14 + TSS region transcription start site region 104023
Tssr104024 11 88068316 to 88068332 16 + TSS region transcription start site region 104024
Tssr104025 11 88068379 to 88068385 6 + TSS region transcription start site region 104025
Tssr104026 11 88068540 to 88068571 31 + TSS region transcription start site region 104026
D11Mit196.1 11 88076810 to 88076952 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 196.1
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1