Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87587730-87787733

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept4 11 87568903 to 87590539 21636 + protein coding gene septin 4
Cpgi3492 11 87591112 to 87592595 1483 CpG island CpG island 3492
Tssr109965 11 87591556 to 87591560 4 - TSS region transcription start site region 109965
Tssr109966 11 87591712 to 87591723 11 - TSS region transcription start site region 109966
Tssr109967 11 87591751 to 87591773 22 - TSS region transcription start site region 109967
Tssr103941 11 87592145 to 87592229 84 + TSS region transcription start site region 103941
Mtmr4 11 87592162 to 87616302 24140 + protein coding gene myotubularin related protein 4
Tssr103942 11 87592641 to 87592672 31 + TSS region transcription start site region 103942
Tssr103943 11 87592944 to 87593006 62 + TSS region transcription start site region 103943
Tssr103944 11 87593589 to 87593593 4 + TSS region transcription start site region 103944
Cpgi3493 11 87595306 to 87596108 802 CpG island CpG island 3493
Tssr103945 11 87595646 to 87595659 13 + TSS region transcription start site region 103945
Tssr103946 11 87595664 to 87595719 55 + TSS region transcription start site region 103946
Cpgi3494 11 87616818 to 87618007 1189 CpG island CpG island 3494
Tssr103947 11 87617151 to 87617164 13 + TSS region transcription start site region 103947
Hsf5 11 87617164 to 87659542 42378 + protein coding gene heat shock transcription factor family member 5
Tssr103948 11 87617176 to 87617200 24 + TSS region transcription start site region 103948
Tssr103949 11 87617211 to 87617222 11 + TSS region transcription start site region 103949
Tssr103950 11 87617226 to 87617247 21 + TSS region transcription start site region 103950
Tssr103951 11 87617253 to 87617258 5 + TSS region transcription start site region 103951
Cpgi3495 11 87639116 to 87639552 436 CpG island CpG island 3495
Tssr103952 11 87657621 to 87657626 5 + TSS region transcription start site region 103952
Tssr103953 11 87662618 to 87662680 62 + TSS region transcription start site region 103953
Tssr103954 11 87662685 to 87662699 14 + TSS region transcription start site region 103954
Tssr3628 11 87662716 to 87662727 11 + TSS region transcription start site region 3628
Rnf43 11 87663087 to 87735539 72452 + protein coding gene ring finger protein 43
Tssr3629 11 87687730 to 87687733 3 + TSS region transcription start site region 3629
Gm25968 11 87694482 to 87694581 99 - snRNA gene predicted gene, 25968
Tssr103955 11 87699895 to 87699914 19 + TSS region transcription start site region 103955
1110028F11Rik 11 87701396 to 87705331 3935 + sense intronic lncRNA gene RIKEN cDNA 1110028F11 gene
Tssr3630 11 87719655 to 87719660 5 - TSS region transcription start site region 3630
Tssr109968 11 87734628 to 87734639 11 - TSS region transcription start site region 109968
Cpgi3496 11 87736718 to 87737993 1275 CpG island CpG island 3496
Tssr103956 11 87737530 to 87737566 36 + TSS region transcription start site region 103956
Supt4a 11 87737552 to 87743623 6071 + protein coding gene suppressor of Ty 4A
Tssr103957 11 87737576 to 87737593 17 + TSS region transcription start site region 103957
Tssr103958 11 87745193 to 87745205 12 + TSS region transcription start site region 103958
Tssr109969 11 87748808 to 87748837 29 - TSS region transcription start site region 109969
Tssr109970 11 87748844 to 87748860 16 - TSS region transcription start site region 109970
Tssr103959 11 87748954 to 87748969 15 + TSS region transcription start site region 103959
Tssr109971 11 87749406 to 87749423 17 - TSS region transcription start site region 109971
Tssr109972 11 87749458 to 87749487 29 - TSS region transcription start site region 109972
Tssr103960 11 87749732 to 87749751 19 + TSS region transcription start site region 103960
Tssr103961 11 87749878 to 87749901 23 + TSS region transcription start site region 103961
Tssr103962 11 87751191 to 87751216 25 + TSS region transcription start site region 103962
Tssr109973 11 87751614 to 87751633 19 - TSS region transcription start site region 109973
Tssr109974 11 87751684 to 87751705 21 - TSS region transcription start site region 109974
Tssr103963 11 87751792 to 87751810 18 + TSS region transcription start site region 103963
Tssr103964 11 87751819 to 87751843 24 + TSS region transcription start site region 103964
Tssr103965 11 87751908 to 87751924 16 + TSS region transcription start site region 103965
Tssr103966 11 87754860 to 87754871 11 + TSS region transcription start site region 103966
Tssr103967 11 87755567 to 87755588 21 + TSS region transcription start site region 103967
Mir142hg 11 87755577 to 87757270 1693 + lincRNA gene Mir142 host gene (non-protein coding)
Tssr103968 11 87755889 to 87755901 12 + TSS region transcription start site region 103968
Tssr103969 11 87756631 to 87756635 4 + TSS region transcription start site region 103969
Tssr103970 11 87756789 to 87756826 37 + TSS region transcription start site region 103970
Cpgi3497 11 87756804 to 87757353 549 CpG island CpG island 3497
Mir142b 11 87756841 to 87756955 114 - miRNA gene microRNA 142b
Mir142 11 87756864 to 87756927 63 + miRNA gene microRNA 142
Tssr103971 11 87756925 to 87756929 4 + TSS region transcription start site region 103971
Tssr109975 11 87757265 to 87757269 4 - TSS region transcription start site region 109975
Tssr103972 11 87760533 to 87760551 18 + TSS region transcription start site region 103972
Tspoap1 11 87760541 to 87785928 25387 + protein coding gene TSPO associated protein 1
Cpgi3498 11 87760702 to 87760864 162 CpG island CpG island 3498
Tssr103973 11 87760898 to 87760903 5 + TSS region transcription start site region 103973
Tssr103974 11 87761062 to 87761067 5 + TSS region transcription start site region 103974
Tssr103975 11 87762048 to 87762069 21 + TSS region transcription start site region 103975
Cpgi3499 11 87763490 to 87765066 1576 CpG island CpG island 3499
Tssr103976 11 87764702 to 87764732 30 + TSS region transcription start site region 103976
Tssr103977 11 87774471 to 87774472 1 + TSS region transcription start site region 103977
Cpgi3500 11 87778119 to 87779165 1046 CpG island CpG island 3500
Gm34064 11 87783349 to 87795187 11838 - lncRNA gene predicted gene, 34064