Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87385065-87575823

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rad51c 11 87377607 to 87404954 27347 - protein coding gene RAD51 paralog C
Cpgi3486 11 87404087 to 87405303 1216 CpG island CpG island 3486
Tssr109961 11 87404380 to 87404424 44 - TSS region transcription start site region 109961
Tssr109962 11 87404466 to 87404509 43 - TSS region transcription start site region 109962
Tssr103922 11 87405036 to 87405045 9 + TSS region transcription start site region 103922
Tssr103923 11 87405049 to 87405113 64 + TSS region transcription start site region 103923
Tex14 11 87405065 to 87555823 150758 + protein coding gene testis expressed gene 14
Tssr109963 11 87421982 to 87421993 11 - TSS region transcription start site region 109963
Rnu1a1 11 87422867 to 87423030 163 + snRNA gene U1a1 small nuclear RNA
Gm22068 11 87426716 to 87426879 163 + snRNA gene predicted gene, 22068
Tssr103924 11 87433218 to 87433260 42 + TSS region transcription start site region 103924
Cpgi3487 11 87442706 to 87442906 200 CpG island CpG island 3487
Rnu3b1 11 87443237 to 87443451 214 + snRNA gene U3B small nuclear RNA 1
Gm23137 11 87444474 to 87444580 106 - snRNA gene predicted gene, 23137
Tssr103925 11 87447887 to 87447891 4 + TSS region transcription start site region 103925
Cpgi3488 11 87448104 to 87448287 183 CpG island CpG island 3488
Rnu3b3 11 87448627 to 87448841 214 + snRNA gene U3B small nuclear RNA 3
D11Mit56 11 87461242 to 87461424 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 56
Cpgi3489 11 87461712 to 87462004 292 CpG island CpG island 3489
Rnu3b4 11 87462286 to 87462503 217 + snRNA gene U3B small nuclear RNA 4
Gm11489 11 87467679 to 87469058 1379 + pseudogene predicted gene 11489
Cpgi3490 11 87470822 to 87471074 252 CpG island CpG island 3490
Rnu3b2 11 87471368 to 87471582 214 + snRNA gene U3B small nuclear RNA 2
Tssr103926 11 87471592 to 87471603 11 + TSS region transcription start site region 103926
Tssr103927 11 87471666 to 87471674 8 + TSS region transcription start site region 103927
D11Mit158 11 87521763 to 87521912 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 158
D11Mit323 11 87521768 to 87521892 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 323
Gm34000 11 87547859 to 87566624 18765 - lncRNA gene predicted gene, 34000
Tssr109964 11 87566582 to 87566602 20 - TSS region transcription start site region 109964
Gm11492 11 87566653 to 87569250 2597 + protein coding gene predicted gene 11492
Tssr103928 11 87566656 to 87566661 5 + TSS region transcription start site region 103928
Tssr103929 11 87566670 to 87566673 3 + TSS region transcription start site region 103929
Tssr103930 11 87566680 to 87566710 30 + TSS region transcription start site region 103930
Tssr103931 11 87566718 to 87566732 14 + TSS region transcription start site region 103931
Sept4 11 87568903 to 87590539 21636 + protein coding gene septin 4