Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:87126906-87458994

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48 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11491 11 87121567 to 87126958 5391 - lncRNA gene predicted gene 11491
Cpgi3484 11 87126719 to 87127888 1169 CpG island CpG island 3484
Tssr103911 11 87127042 to 87127051 9 + TSS region transcription start site region 103911
Tssr103912 11 87127052 to 87127105 53 + TSS region transcription start site region 103912
Trim37 11 87127077 to 87220683 93606 + protein coding gene tripartite motif-containing 37
Tssr103913 11 87127108 to 87127133 25 + TSS region transcription start site region 103913
Tssr103914 11 87127164 to 87127171 7 + TSS region transcription start site region 103914
Tssr103915 11 87127172 to 87127264 92 + TSS region transcription start site region 103915
Tssr103916 11 87127267 to 87127279 12 + TSS region transcription start site region 103916
Tssr109950 11 87212425 to 87212438 13 - TSS region transcription start site region 109950
Tssr103917 11 87216460 to 87216481 21 + TSS region transcription start site region 103917
Tssr103918 11 87216484 to 87216499 15 + TSS region transcription start site region 103918
Tssr103919 11 87216951 to 87216958 7 + TSS region transcription start site region 103919
Tssr109951 11 87217714 to 87217758 44 - TSS region transcription start site region 109951
Ppm1e 11 87226906 to 87358994 132088 - protein coding gene protein phosphatase 1E (PP2C domain containing)
Tssr109952 11 87281196 to 87281200 4 - TSS region transcription start site region 109952
Tssr109953 11 87293912 to 87293937 25 - TSS region transcription start site region 109953
Tssr109954 11 87294047 to 87294061 14 - TSS region transcription start site region 109954
Gm11490 11 87304673 to 87304944 271 + pseudogene predicted gene 11490
Gm22883 11 87318694 to 87318799 105 - snRNA gene predicted gene, 22883
Tssr109955 11 87320400 to 87320404 4 - TSS region transcription start site region 109955
Tssr109956 11 87325061 to 87325073 12 - TSS region transcription start site region 109956
Tssr103920 11 87331612 to 87331631 19 + TSS region transcription start site region 103920
Tssr103921 11 87331640 to 87331647 7 + TSS region transcription start site region 103921
5830426K05Rik 11 87340724 to 87343850 3126 - lncRNA gene RIKEN cDNA 5830426K05 gene
Tssr109957 11 87342873 to 87342881 8 - TSS region transcription start site region 109957
Gm33937 11 87357529 to 87361744 4215 + lncRNA gene predicted gene, 33937
Cpgi3485 11 87358030 to 87359344 1314 CpG island CpG island 3485
Tssr109958 11 87358907 to 87358944 37 - TSS region transcription start site region 109958
Tssr109959 11 87359011 to 87359081 70 - TSS region transcription start site region 109959
Tssr109960 11 87359086 to 87359093 7 - TSS region transcription start site region 109960
Rad51c 11 87376645 to 87404954 28309 - protein coding gene RAD51 paralog C
Cpgi3486 11 87404087 to 87405303 1216 CpG island CpG island 3486
Tssr109961 11 87404380 to 87404424 44 - TSS region transcription start site region 109961
Tssr109962 11 87404466 to 87404509 43 - TSS region transcription start site region 109962
Tssr103922 11 87405036 to 87405045 9 + TSS region transcription start site region 103922
Tssr103923 11 87405049 to 87405113 64 + TSS region transcription start site region 103923
Tex14 11 87405065 to 87555823 150758 + protein coding gene testis expressed gene 14
Tssr109963 11 87421982 to 87421993 11 - TSS region transcription start site region 109963
Rnu1a1 11 87422867 to 87423030 163 + snRNA gene U1a1 small nuclear RNA
Gm22068 11 87426716 to 87426879 163 + snRNA gene predicted gene, 22068
Tssr103924 11 87433218 to 87433260 42 + TSS region transcription start site region 103924
Cpgi3487 11 87442706 to 87442906 200 CpG island CpG island 3487
Snord3b1 11 87443237 to 87443451 214 + snoRNA gene small nucleolar RNA, C/D box 3B1
Gm23137 11 87444474 to 87444580 106 - snRNA gene predicted gene, 23137
Tssr103925 11 87447887 to 87447891 4 + TSS region transcription start site region 103925
Cpgi3488 11 87448104 to 87448287 183 CpG island CpG island 3488
Snord3b3 11 87448627 to 87448841 214 + snoRNA gene small nucleolar RNA, C/D box 3B3