Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87086612-87576631

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smg8 11 87077732 to 87086774 9042 - protein coding gene smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Cpgi3482 11 87086232 to 87086959 727 CpG island CpG island 3482
Tssr109944 11 87086732 to 87086743 11 - TSS region transcription start site region 109944
Tssr109945 11 87086752 to 87086781 29 - TSS region transcription start site region 109945
Prr11 11 87089153 to 87108708 19555 - protein coding gene proline rich 11
Tssr109946 11 87108656 to 87108719 63 - TSS region transcription start site region 109946
Cpgi3483 11 87108715 to 87110202 1487 CpG island CpG island 3483
Tssr109947 11 87108736 to 87108759 23 - TSS region transcription start site region 109947
Tssr109948 11 87108766 to 87108783 17 - TSS region transcription start site region 109948
Tssr103905 11 87109181 to 87109195 14 + TSS region transcription start site region 103905
Tssr103906 11 87109221 to 87109239 18 + TSS region transcription start site region 103906
Tssr103907 11 87109252 to 87109274 22 + TSS region transcription start site region 103907
Ska2 11 87109261 to 87122974 13713 + protein coding gene spindle and kinetochore associated complex subunit 2
Tssr103908 11 87109560 to 87109583 23 + TSS region transcription start site region 103908
Mir301 11 87113004 to 87113089 85 + miRNA gene microRNA 301
Tssr103909 11 87113078 to 87113080 2 + TSS region transcription start site region 103909
Gm11491 11 87121567 to 87126958 5391 - antisense lncRNA gene predicted gene 11491
Tssr103910 11 87121580 to 87121583 3 + TSS region transcription start site region 103910
Tssr109949 11 87122063 to 87122064 1 - TSS region transcription start site region 109949
Cpgi3484 11 87126719 to 87127888 1169 CpG island CpG island 3484
Tssr103911 11 87127042 to 87127051 9 + TSS region transcription start site region 103911
Tssr103912 11 87127052 to 87127105 53 + TSS region transcription start site region 103912
Trim37 11 87127077 to 87220683 93606 + protein coding gene tripartite motif-containing 37
Tssr103913 11 87127108 to 87127133 25 + TSS region transcription start site region 103913
Tssr103914 11 87127164 to 87127171 7 + TSS region transcription start site region 103914
Tssr103915 11 87127172 to 87127264 92 + TSS region transcription start site region 103915
Tssr103916 11 87127267 to 87127279 12 + TSS region transcription start site region 103916
Tssr109950 11 87212425 to 87212438 13 - TSS region transcription start site region 109950
Tssr103917 11 87216460 to 87216481 21 + TSS region transcription start site region 103917
Tssr103918 11 87216484 to 87216499 15 + TSS region transcription start site region 103918
Tssr103919 11 87216951 to 87216958 7 + TSS region transcription start site region 103919
Tssr109951 11 87217714 to 87217758 44 - TSS region transcription start site region 109951
Ppm1e 11 87226906 to 87358994 132088 - protein coding gene protein phosphatase 1E (PP2C domain containing)
Tssr109952 11 87281196 to 87281200 4 - TSS region transcription start site region 109952
Tssr109953 11 87293912 to 87293937 25 - TSS region transcription start site region 109953
Tssr109954 11 87294047 to 87294061 14 - TSS region transcription start site region 109954
Gm11490 11 87304673 to 87304944 271 + pseudogene predicted gene 11490
Gm22883 11 87318694 to 87318799 105 - snRNA gene predicted gene, 22883
Tssr109955 11 87320400 to 87320404 4 - TSS region transcription start site region 109955
Tssr109956 11 87325061 to 87325073 12 - TSS region transcription start site region 109956
Tssr103920 11 87331612 to 87331631 19 + TSS region transcription start site region 103920
Tssr103921 11 87331640 to 87331647 7 + TSS region transcription start site region 103921
5830426K05Rik 11 87340723 to 87343849 3126 unclassified gene RIKEN cDNA 5830426K05 gene
Tssr109957 11 87342873 to 87342881 8 - TSS region transcription start site region 109957
Gm33937 11 87357523 to 87361744 4221 + lncRNA gene predicted gene, 33937
Cpgi3485 11 87358030 to 87359344 1314 CpG island CpG island 3485
Tssr109958 11 87358907 to 87358944 37 - TSS region transcription start site region 109958
Tssr109959 11 87359011 to 87359081 70 - TSS region transcription start site region 109959
Tssr109960 11 87359086 to 87359093 7 - TSS region transcription start site region 109960
Rad51c 11 87377607 to 87404954 27347 - protein coding gene RAD51 paralog C
Cpgi3486 11 87404087 to 87405303 1216 CpG island CpG island 3486
Tssr109961 11 87404380 to 87404424 44 - TSS region transcription start site region 109961
Tssr109962 11 87404466 to 87404509 43 - TSS region transcription start site region 109962
Tssr103922 11 87405036 to 87405045 9 + TSS region transcription start site region 103922
Tssr103923 11 87405049 to 87405113 64 + TSS region transcription start site region 103923
Tex14 11 87405065 to 87555823 150758 + protein coding gene testis expressed gene 14
Tssr109963 11 87421982 to 87421993 11 - TSS region transcription start site region 109963
Rnu1a1 11 87422867 to 87423030 163 + snRNA gene U1a1 small nuclear RNA
Gm22068 11 87426716 to 87426879 163 + snRNA gene predicted gene, 22068
Tssr103924 11 87433218 to 87433260 42 + TSS region transcription start site region 103924
Cpgi3487 11 87442706 to 87442906 200 CpG island CpG island 3487
Rnu3b1 11 87443237 to 87443451 214 + snRNA gene U3B small nuclear RNA 1
Gm23137 11 87444474 to 87444580 106 - snRNA gene predicted gene, 23137
Tssr103925 11 87447887 to 87447891 4 + TSS region transcription start site region 103925
Cpgi3488 11 87448104 to 87448287 183 CpG island CpG island 3488
Rnu3b3 11 87448627 to 87448841 214 + snRNA gene U3B small nuclear RNA 3
D11Mit56 11 87461242 to 87461424 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 56
Cpgi3489 11 87461712 to 87462004 292 CpG island CpG island 3489
Rnu3b4 11 87462286 to 87462503 217 + snRNA gene U3B small nuclear RNA 4
Gm11489 11 87467679 to 87469058 1379 + pseudogene predicted gene 11489
Cpgi3490 11 87470822 to 87471074 252 CpG island CpG island 3490
Rnu3b2 11 87471368 to 87471582 214 + snRNA gene U3B small nuclear RNA 2
Tssr103926 11 87471592 to 87471603 11 + TSS region transcription start site region 103926
Tssr103927 11 87471666 to 87471674 8 + TSS region transcription start site region 103927
D11Mit158 11 87521763 to 87521912 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 158
D11Mit323 11 87521768 to 87521892 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 323
Gm34000 11 87547859 to 87566624 18765 - lncRNA gene predicted gene, 34000
Tssr109964 11 87566582 to 87566602 20 - TSS region transcription start site region 109964
Gm11492 11 87566653 to 87569250 2597 + protein coding gene predicted gene 11492
Tssr103928 11 87566656 to 87566661 5 + TSS region transcription start site region 103928
Tssr103929 11 87566670 to 87566673 3 + TSS region transcription start site region 103929
Tssr103930 11 87566680 to 87566710 30 + TSS region transcription start site region 103930
Tssr103931 11 87566718 to 87566732 14 + TSS region transcription start site region 103931
Sept4 11 87568903 to 87590539 21636 + protein coding gene septin 4