Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:87076484-87356499

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smg8 11 87077732 to 87086774 9042 - protein coding gene smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gm9378 11 87078787 to 87079257 470 + pseudogene predicted gene 9378
Cpgi3482 11 87086232 to 87086959 727 CpG island CpG island 3482
Tssr109944 11 87086732 to 87086743 11 - TSS region transcription start site region 109944
Tssr109945 11 87086752 to 87086781 29 - TSS region transcription start site region 109945
Prr11 11 87089153 to 87108708 19555 - protein coding gene proline rich 11
Tssr109946 11 87108656 to 87108719 63 - TSS region transcription start site region 109946
Cpgi3483 11 87108715 to 87110202 1487 CpG island CpG island 3483
Tssr109947 11 87108736 to 87108759 23 - TSS region transcription start site region 109947
Tssr109948 11 87108766 to 87108783 17 - TSS region transcription start site region 109948
Tssr103905 11 87109181 to 87109195 14 + TSS region transcription start site region 103905
Tssr103906 11 87109221 to 87109239 18 + TSS region transcription start site region 103906
Tssr103907 11 87109252 to 87109274 22 + TSS region transcription start site region 103907
Ska2 11 87109261 to 87122974 13713 + protein coding gene spindle and kinetochore associated complex subunit 2
Tssr103908 11 87109560 to 87109583 23 + TSS region transcription start site region 103908
Mir301 11 87113004 to 87113089 85 + miRNA gene microRNA 301
Tssr103909 11 87113078 to 87113080 2 + TSS region transcription start site region 103909
Gm11491 11 87121567 to 87126958 5391 - antisense lncRNA gene predicted gene 11491
Tssr103910 11 87121580 to 87121583 3 + TSS region transcription start site region 103910
Tssr109949 11 87122063 to 87122064 1 - TSS region transcription start site region 109949
Cpgi3484 11 87126719 to 87127888 1169 CpG island CpG island 3484
Tssr103911 11 87127042 to 87127051 9 + TSS region transcription start site region 103911
Tssr103912 11 87127052 to 87127105 53 + TSS region transcription start site region 103912
Trim37 11 87127077 to 87220683 93606 + protein coding gene tripartite motif-containing 37
Tssr103913 11 87127108 to 87127133 25 + TSS region transcription start site region 103913
Tssr103914 11 87127164 to 87127171 7 + TSS region transcription start site region 103914
Tssr103915 11 87127172 to 87127264 92 + TSS region transcription start site region 103915
Tssr103916 11 87127267 to 87127279 12 + TSS region transcription start site region 103916
Tssr109950 11 87212425 to 87212438 13 - TSS region transcription start site region 109950
Tssr103917 11 87216460 to 87216481 21 + TSS region transcription start site region 103917
Tssr103918 11 87216484 to 87216499 15 + TSS region transcription start site region 103918
Tssr103919 11 87216951 to 87216958 7 + TSS region transcription start site region 103919
Tssr109951 11 87217714 to 87217758 44 - TSS region transcription start site region 109951
Ppm1e 11 87226906 to 87358994 132088 - protein coding gene protein phosphatase 1E (PP2C domain containing)
Tssr109952 11 87281196 to 87281200 4 - TSS region transcription start site region 109952
Tssr109953 11 87293912 to 87293937 25 - TSS region transcription start site region 109953
Tssr109954 11 87294047 to 87294061 14 - TSS region transcription start site region 109954
Gm11490 11 87304673 to 87304944 271 + pseudogene predicted gene 11490
Gm22883 11 87318694 to 87318799 105 - snRNA gene predicted gene, 22883
Tssr109955 11 87320400 to 87320404 4 - TSS region transcription start site region 109955
Tssr109956 11 87325061 to 87325073 12 - TSS region transcription start site region 109956
Tssr103920 11 87331612 to 87331631 19 + TSS region transcription start site region 103920
Tssr103921 11 87331640 to 87331647 7 + TSS region transcription start site region 103921
5830426K05Rik 11 87340723 to 87343849 3126 unclassified gene RIKEN cDNA 5830426K05 gene
Tssr109957 11 87342873 to 87342881 8 - TSS region transcription start site region 109957