Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86745246-87055250

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cltc 11 86694610 to 86757742 63132 - protein coding gene clathrin, heavy polypeptide (Hc)
Tssr109914 11 86750462 to 86750475 13 - TSS region transcription start site region 109914
Tssr109915 11 86752515 to 86752525 10 - TSS region transcription start site region 109915
Cpgi3477 11 86756846 to 86758311 1465 CpG island CpG island 3477
Tssr109916 11 86756996 to 86757018 22 - TSS region transcription start site region 109916
Tssr109917 11 86757301 to 86757314 13 - TSS region transcription start site region 109917
Tssr109918 11 86757337 to 86757344 7 - TSS region transcription start site region 109918
Tssr109919 11 86757425 to 86757436 11 - TSS region transcription start site region 109919
Tssr109920 11 86757452 to 86757463 11 - TSS region transcription start site region 109920
Tssr109921 11 86757483 to 86757572 89 - TSS region transcription start site region 109921
Gm42085 11 86757794 to 86775647 17853 + lncRNA gene predicted gene, 42085
Tssr3625 11 86757836 to 86757876 40 + TSS region transcription start site region 3625
Tssr103897 11 86757879 to 86757911 32 + TSS region transcription start site region 103897
Tssr103898 11 86757917 to 86757928 11 + TSS region transcription start site region 103898
Tssr3626 11 86758164 to 86758189 25 + TSS region transcription start site region 3626
Tssr103899 11 86758228 to 86758232 4 + TSS region transcription start site region 103899
Dhx40 11 86768846 to 86807746 38900 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 40
Tssr109922 11 86805271 to 86805275 4 - TSS region transcription start site region 109922
Cpgi3478 11 86807119 to 86807966 847 CpG island CpG island 3478
Tssr109923 11 86807541 to 86807553 12 - TSS region transcription start site region 109923
Tssr109924 11 86807565 to 86807622 57 - TSS region transcription start site region 109924
Tssr109925 11 86807624 to 86807645 21 - TSS region transcription start site region 109925
Tssr3627 11 86807658 to 86807661 3 - TSS region transcription start site region 3627
Gm33742 11 86818625 to 86867595 48970 - lncRNA gene predicted gene, 33742
Tssr109926 11 86828460 to 86828471 11 - TSS region transcription start site region 109926
Tssr109927 11 86838722 to 86838726 4 - TSS region transcription start site region 109927
Gm38942 11 86858951 to 86867792 8841 + lncRNA gene predicted gene, 38942
Tssr109928 11 86860079 to 86860107 28 - TSS region transcription start site region 109928
Tssr103900 11 86860441 to 86860470 29 + TSS region transcription start site region 103900
Tssr109929 11 86867645 to 86867660 15 - TSS region transcription start site region 109929
Tssr103901 11 86872874 to 86872885 11 + TSS region transcription start site region 103901
Tssr109930 11 86875975 to 86875978 3 - TSS region transcription start site region 109930
Gm46290 11 86886628 to 86890125 3497 + protein coding gene predicted gene, 46290
Cpgi3479 11 86894059 to 86894409 350 CpG island CpG island 3479
Tssr103902 11 86900246 to 86900250 4 + TSS region transcription start site region 103902
D11Mit282 11 86905214 to 86905339 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 282
Ypel2 11 86936425 to 86993707 57282 - protein coding gene yippee like 2
4930406D14Rik 11 86950163 to 86952456 2293 unclassified gene RIKEN cDNA 4930406D14 gene
Cpgi3480 11 86992759 to 86994040 1281 CpG island CpG island 3480
Tssr109931 11 86993634 to 86993644 10 - TSS region transcription start site region 109931
Tssr109932 11 86993652 to 86993674 22 - TSS region transcription start site region 109932
Tssr109933 11 86993682 to 86993705 23 - TSS region transcription start site region 109933
Tssr109934 11 86993715 to 86993771 56 - TSS region transcription start site region 109934
Tssr109935 11 86993801 to 86993820 19 - TSS region transcription start site region 109935
Gm22387 11 86997133 to 86997263 130 - snoRNA gene predicted gene, 22387
Tssr103903 11 87015984 to 87015989 5 + TSS region transcription start site region 103903
Tssr109936 11 87025404 to 87025425 21 - TSS region transcription start site region 109936
Tssr103904 11 87025653 to 87025667 14 + TSS region transcription start site region 103904
Tssr109937 11 87026642 to 87026671 29 - TSS region transcription start site region 109937
Gdpd1 11 87033867 to 87074062 40195 - protein coding gene glycerophosphodiester phosphodiesterase domain containing 1
Tssr109938 11 87034408 to 87034411 3 - TSS region transcription start site region 109938
Tssr109939 11 87045845 to 87045860 15 - TSS region transcription start site region 109939
Tssr109940 11 87045911 to 87045931 20 - TSS region transcription start site region 109940