Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86467164-87787171

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338 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876
D11Wsu48e 11 86572467 to 86572722 255 DNA segment DNA segment, Chr 11, Wayne State University 48, expressed
Tssr109851 11 86577284 to 86577290 6 - TSS region transcription start site region 109851
Tssr103877 11 86577434 to 86577460 26 + TSS region transcription start site region 103877
Tssr103878 11 86577523 to 86577537 14 + TSS region transcription start site region 103878
Gm9975 11 86578495 to 86580768 2273 unclassified non-coding RNA gene predicted gene 9975
Tssr3622 11 86579101 to 86579107 6 + TSS region transcription start site region 3622
Tssr103879 11 86579152 to 86579178 26 + TSS region transcription start site region 103879
Tssr109852 11 86580432 to 86580437 5 - TSS region transcription start site region 109852
2210402C17Rik 11 86581200 to 86581693 493 unclassified gene RIKEN cDNA 2210402C17 gene
Tssr109853 11 86581365 to 86581369 4 - TSS region transcription start site region 109853
Vmp1 11 86583854 to 86683822 99968 - protein coding gene vacuole membrane protein 1
Mir21a 11 86584067 to 86584158 91 - miRNA gene microRNA 21a
Tssr109854 11 86584424 to 86584433 9 - TSS region transcription start site region 109854
Tssr109855 11 86584509 to 86584560 51 - TSS region transcription start site region 109855
Tssr109856 11 86584683 to 86584698 15 - TSS region transcription start site region 109856
Tssr109857 11 86585021 to 86585041 20 - TSS region transcription start site region 109857
Tssr109858 11 86585042 to 86585059 17 - TSS region transcription start site region 109858
Tssr109859 11 86585083 to 86585097 14 - TSS region transcription start site region 109859
Tssr109860 11 86585124 to 86585145 21 - TSS region transcription start site region 109860
Tssr109861 11 86585218 to 86585255 37 - TSS region transcription start site region 109861
Tssr109862 11 86585441 to 86585454 13 - TSS region transcription start site region 109862
Tssr109863 11 86586208 to 86586221 13 - TSS region transcription start site region 109863
Tssr109864 11 86586398 to 86586403 5 - TSS region transcription start site region 109864
Tssr109865 11 86586443 to 86586452 9 - TSS region transcription start site region 109865
Tssr109866 11 86586491 to 86586496 5 - TSS region transcription start site region 109866
Tssr109867 11 86586589 to 86586598 9 - TSS region transcription start site region 109867
Tssr109868 11 86586670 to 86586689 19 - TSS region transcription start site region 109868
Tssr109869 11 86586817 to 86586848 31 - TSS region transcription start site region 109869
Tssr109870 11 86586885 to 86586939 54 - TSS region transcription start site region 109870
Tssr109871 11 86586954 to 86586979 25 - TSS region transcription start site region 109871
Tssr109872 11 86586996 to 86587012 16 - TSS region transcription start site region 109872
Tssr109873 11 86587027 to 86587036 9 - TSS region transcription start site region 109873
Tssr109874 11 86587039 to 86587050 11 - TSS region transcription start site region 109874
Tssr103880 11 86587190 to 86587209 19 + TSS region transcription start site region 103880
Tssr103881 11 86587229 to 86587254 25 + TSS region transcription start site region 103881
Tssr103882 11 86587281 to 86587291 10 + TSS region transcription start site region 103882
Gm46289 11 86590528 to 86598495 7967 + lncRNA gene predicted gene, 46289
Tssr103883 11 86593260 to 86593271 11 + TSS region transcription start site region 103883
Tssr103884 11 86593285 to 86593301 16 + TSS region transcription start site region 103884
Tssr3623 11 86593307 to 86593316 9 + TSS region transcription start site region 3623
Tssr109875 11 86598611 to 86598651 40 - TSS region transcription start site region 109875
Tssr103885 11 86598767 to 86598798 31 + TSS region transcription start site region 103885
Tssr3624 11 86600042 to 86600094 52 + TSS region transcription start site region 3624
Tssr109876 11 86602223 to 86602251 28 - TSS region transcription start site region 109876
Tssr109877 11 86602253 to 86602303 50 - TSS region transcription start site region 109877
Tssr109878 11 86602334 to 86602345 11 - TSS region transcription start site region 109878
Tssr109879 11 86602361 to 86602372 11 - TSS region transcription start site region 109879
Tssr103886 11 86602361 to 86602386 25 + TSS region transcription start site region 103886
Tssr103887 11 86604013 to 86604040 27 + TSS region transcription start site region 103887
Tssr103888 11 86604057 to 86604066 9 + TSS region transcription start site region 103888
Tssr103889 11 86613338 to 86613372 34 + TSS region transcription start site region 103889
Tssr109880 11 86614282 to 86614286 4 - TSS region transcription start site region 109880
Tssr103890 11 86614655 to 86614662 7 + TSS region transcription start site region 103890
Tssr103891 11 86618799 to 86618804 5 + TSS region transcription start site region 103891
Tssr109881 11 86624286 to 86624297 11 - TSS region transcription start site region 109881
Tssr109882 11 86624392 to 86624435 43 - TSS region transcription start site region 109882
Tssr103892 11 86629630 to 86629658 28 + TSS region transcription start site region 103892
Tssr103893 11 86630241 to 86630246 5 + TSS region transcription start site region 103893
Gm11478 11 86630428 to 86631026 598 - pseudogene predicted gene 11478
Tssr109883 11 86631062 to 86631064 2 - TSS region transcription start site region 109883
Tssr109884 11 86635511 to 86635535 24 - TSS region transcription start site region 109884
Tssr103894 11 86646807 to 86646852 45 + TSS region transcription start site region 103894
Tssr109885 11 86648231 to 86648245 14 - TSS region transcription start site region 109885
Tssr109886 11 86671169 to 86671186 17 - TSS region transcription start site region 109886
Cpgi3476 11 86683446 to 86684243 797 CpG island CpG island 3476
Tssr109887 11 86683499 to 86683548 49 - TSS region transcription start site region 109887
Tssr109888 11 86683761 to 86683847 86 - TSS region transcription start site region 109888
Tssr103895 11 86683886 to 86683897 11 + TSS region transcription start site region 103895
Tssr109889 11 86683975 to 86683986 11 - TSS region transcription start site region 109889
Ptrh2 11 86683985 to 86692457 8472 + protein coding gene peptidyl-tRNA hydrolase 2
Tssr103896 11 86684034 to 86684089 55 + TSS region transcription start site region 103896
Tssr109890 11 86688780 to 86688785 5 - TSS region transcription start site region 109890
Cltc 11 86694610 to 86757742 63132 - protein coding gene clathrin, heavy polypeptide (Hc)
Tssr109891 11 86694990 to 86695006 16 - TSS region transcription start site region 109891
Tssr109892 11 86695064 to 86695090 26 - TSS region transcription start site region 109892
Tssr109893 11 86695326 to 86695347 21 - TSS region transcription start site region 109893
Tssr109894 11 86695353 to 86695366 13 - TSS region transcription start site region 109894
Tssr109895 11 86704173 to 86704219 46 - TSS region transcription start site region 109895
Tssr109896 11 86704956 to 86704978 22 - TSS region transcription start site region 109896
Tssr109897 11 86705171 to 86705218 47 - TSS region transcription start site region 109897
Tssr109898 11 86705219 to 86705247 28 - TSS region transcription start site region 109898
Tssr109899 11 86707092 to 86707106 14 - TSS region transcription start site region 109899
Tssr109900 11 86710925 to 86710955 30 - TSS region transcription start site region 109900
Tssr109901 11 86711375 to 86711423 48 - TSS region transcription start site region 109901
Tssr109902 11 86711886 to 86711903 17 - TSS region transcription start site region 109902
Tssr109903 11 86715720 to 86715757 37 - TSS region transcription start site region 109903
Tssr109904 11 86718018 to 86718050 32 - TSS region transcription start site region 109904
Tssr109905 11 86719495 to 86719606 111 - TSS region transcription start site region 109905
Tssr109906 11 86722235 to 86722261 26 - TSS region transcription start site region 109906
Tssr109907 11 86726334 to 86726348 14 - TSS region transcription start site region 109907
Tssr109908 11 86726442 to 86726461 19 - TSS region transcription start site region 109908
Tssr109909 11 86730302 to 86730371 69 - TSS region transcription start site region 109909
Tssr109910 11 86730806 to 86730817 11 - TSS region transcription start site region 109910
Tssr109911 11 86738917 to 86738966 49 - TSS region transcription start site region 109911
Tssr109912 11 86741141 to 86741165 24 - TSS region transcription start site region 109912
Tssr109913 11 86741719 to 86741720 1 - TSS region transcription start site region 109913
Tssr109914 11 86750462 to 86750475 13 - TSS region transcription start site region 109914
Tssr109915 11 86752515 to 86752525 10 - TSS region transcription start site region 109915
Cpgi3477 11 86756846 to 86758311 1465 CpG island CpG island 3477
Tssr109916 11 86756996 to 86757018 22 - TSS region transcription start site region 109916
Tssr109917 11 86757301 to 86757314 13 - TSS region transcription start site region 109917
Tssr109918 11 86757337 to 86757344 7 - TSS region transcription start site region 109918
Tssr109919 11 86757425 to 86757436 11 - TSS region transcription start site region 109919
Tssr109920 11 86757452 to 86757463 11 - TSS region transcription start site region 109920
Tssr109921 11 86757483 to 86757572 89 - TSS region transcription start site region 109921
Gm42085 11 86757794 to 86775647 17853 + lncRNA gene predicted gene, 42085
Tssr3625 11 86757836 to 86757876 40 + TSS region transcription start site region 3625
Tssr103897 11 86757879 to 86757911 32 + TSS region transcription start site region 103897
Tssr103898 11 86757917 to 86757928 11 + TSS region transcription start site region 103898
Tssr3626 11 86758164 to 86758189 25 + TSS region transcription start site region 3626
Tssr103899 11 86758228 to 86758232 4 + TSS region transcription start site region 103899
Dhx40 11 86768846 to 86807746 38900 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 40
Tssr109922 11 86805271 to 86805275 4 - TSS region transcription start site region 109922
Cpgi3478 11 86807119 to 86807966 847 CpG island CpG island 3478
Tssr109923 11 86807541 to 86807553 12 - TSS region transcription start site region 109923
Tssr109924 11 86807565 to 86807622 57 - TSS region transcription start site region 109924
Tssr109925 11 86807624 to 86807645 21 - TSS region transcription start site region 109925
Tssr3627 11 86807658 to 86807661 3 - TSS region transcription start site region 3627
Gm33742 11 86818625 to 86867595 48970 - lncRNA gene predicted gene, 33742
Tssr109926 11 86828460 to 86828471 11 - TSS region transcription start site region 109926
Tssr109927 11 86838722 to 86838726 4 - TSS region transcription start site region 109927
Gm38942 11 86858951 to 86867792 8841 + lncRNA gene predicted gene, 38942
Tssr109928 11 86860079 to 86860107 28 - TSS region transcription start site region 109928
Tssr103900 11 86860441 to 86860470 29 + TSS region transcription start site region 103900
Tssr109929 11 86867645 to 86867660 15 - TSS region transcription start site region 109929
Tssr103901 11 86872874 to 86872885 11 + TSS region transcription start site region 103901
Tssr109930 11 86875975 to 86875978 3 - TSS region transcription start site region 109930
Gm46290 11 86886628 to 86890125 3497 + protein coding gene predicted gene, 46290
Cpgi3479 11 86894059 to 86894409 350 CpG island CpG island 3479
Tssr103902 11 86900246 to 86900250 4 + TSS region transcription start site region 103902
D11Mit282 11 86905214 to 86905339 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 282
Ypel2 11 86936425 to 86993707 57282 - protein coding gene yippee like 2
4930406D14Rik 11 86950163 to 86952456 2293 unclassified gene RIKEN cDNA 4930406D14 gene
Cpgi3480 11 86992759 to 86994040 1281 CpG island CpG island 3480
Tssr109931 11 86993634 to 86993644 10 - TSS region transcription start site region 109931
Tssr109932 11 86993652 to 86993674 22 - TSS region transcription start site region 109932
Tssr109933 11 86993682 to 86993705 23 - TSS region transcription start site region 109933
Tssr109934 11 86993715 to 86993771 56 - TSS region transcription start site region 109934
Tssr109935 11 86993801 to 86993820 19 - TSS region transcription start site region 109935
Gm22387 11 86997133 to 86997263 130 - snoRNA gene predicted gene, 22387
Tssr103903 11 87015984 to 87015989 5 + TSS region transcription start site region 103903
Tssr109936 11 87025404 to 87025425 21 - TSS region transcription start site region 109936
Tssr103904 11 87025653 to 87025667 14 + TSS region transcription start site region 103904
Tssr109937 11 87026642 to 87026671 29 - TSS region transcription start site region 109937
Gdpd1 11 87033867 to 87074062 40195 - protein coding gene glycerophosphodiester phosphodiesterase domain containing 1
Tssr109938 11 87034408 to 87034411 3 - TSS region transcription start site region 109938
Tssr109939 11 87045845 to 87045860 15 - TSS region transcription start site region 109939
Tssr109940 11 87045911 to 87045931 20 - TSS region transcription start site region 109940
D11Dcr15 11 87060819 to 87060957 138 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 15
D11Mit325 11 87060826 to 87060949 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 325
Cpgi3481 11 87073356 to 87074464 1108 CpG island CpG island 3481
Tssr109941 11 87074055 to 87074071 16 - TSS region transcription start site region 109941
Tssr109942 11 87074073 to 87074116 43 - TSS region transcription start site region 109942
Tssr109943 11 87074120 to 87074131 11 - TSS region transcription start site region 109943
Gm11479 11 87074257 to 87074958 701 - lincRNA gene predicted gene 11479
Smg8 11 87077732 to 87086774 9042 - protein coding gene smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gm9378 11 87078787 to 87079257 470 + pseudogene predicted gene 9378
Cpgi3482 11 87086232 to 87086959 727 CpG island CpG island 3482
Tssr109944 11 87086732 to 87086743 11 - TSS region transcription start site region 109944
Tssr109945 11 87086752 to 87086781 29 - TSS region transcription start site region 109945
Prr11 11 87089153 to 87108708 19555 - protein coding gene proline rich 11
Tssr109946 11 87108656 to 87108719 63 - TSS region transcription start site region 109946
Cpgi3483 11 87108715 to 87110202 1487 CpG island CpG island 3483
Tssr109947 11 87108736 to 87108759 23 - TSS region transcription start site region 109947
Tssr109948 11 87108766 to 87108783 17 - TSS region transcription start site region 109948
Tssr103905 11 87109181 to 87109195 14 + TSS region transcription start site region 103905
Tssr103906 11 87109221 to 87109239 18 + TSS region transcription start site region 103906
Tssr103907 11 87109252 to 87109274 22 + TSS region transcription start site region 103907
Ska2 11 87109261 to 87122974 13713 + protein coding gene spindle and kinetochore associated complex subunit 2
Tssr103908 11 87109560 to 87109583 23 + TSS region transcription start site region 103908
Mir301 11 87113004 to 87113089 85 + miRNA gene microRNA 301
Tssr103909 11 87113078 to 87113080 2 + TSS region transcription start site region 103909
Gm11491 11 87121567 to 87126958 5391 - antisense lncRNA gene predicted gene 11491
Tssr103910 11 87121580 to 87121583 3 + TSS region transcription start site region 103910
Tssr109949 11 87122063 to 87122064 1 - TSS region transcription start site region 109949
Cpgi3484 11 87126719 to 87127888 1169 CpG island CpG island 3484
Tssr103911 11 87127042 to 87127051 9 + TSS region transcription start site region 103911
Tssr103912 11 87127052 to 87127105 53 + TSS region transcription start site region 103912
Trim37 11 87127077 to 87220683 93606 + protein coding gene tripartite motif-containing 37
Tssr103913 11 87127108 to 87127133 25 + TSS region transcription start site region 103913
Tssr103914 11 87127164 to 87127171 7 + TSS region transcription start site region 103914
Tssr103915 11 87127172 to 87127264 92 + TSS region transcription start site region 103915
Tssr103916 11 87127267 to 87127279 12 + TSS region transcription start site region 103916