Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86456365-86706369

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876
D11Wsu48e 11 86572467 to 86572722 255 DNA segment DNA segment, Chr 11, Wayne State University 48, expressed
Tssr109851 11 86577284 to 86577290 6 - TSS region transcription start site region 109851
Tssr103877 11 86577434 to 86577460 26 + TSS region transcription start site region 103877
Tssr103878 11 86577523 to 86577537 14 + TSS region transcription start site region 103878
Gm9975 11 86578495 to 86580768 2273 unclassified non-coding RNA gene predicted gene 9975
Tssr3622 11 86579101 to 86579107 6 + TSS region transcription start site region 3622
Tssr103879 11 86579152 to 86579178 26 + TSS region transcription start site region 103879
Tssr109852 11 86580432 to 86580437 5 - TSS region transcription start site region 109852
2210402C17Rik 11 86581200 to 86581693 493 unclassified gene RIKEN cDNA 2210402C17 gene
Tssr109853 11 86581365 to 86581369 4 - TSS region transcription start site region 109853
Vmp1 11 86583854 to 86683822 99968 - protein coding gene vacuole membrane protein 1
Mir21a 11 86584067 to 86584158 91 - miRNA gene microRNA 21a
Tssr109854 11 86584424 to 86584433 9 - TSS region transcription start site region 109854
Tssr109855 11 86584509 to 86584560 51 - TSS region transcription start site region 109855
Tssr109856 11 86584683 to 86584698 15 - TSS region transcription start site region 109856
Tssr109857 11 86585021 to 86585041 20 - TSS region transcription start site region 109857
Tssr109858 11 86585042 to 86585059 17 - TSS region transcription start site region 109858
Tssr109859 11 86585083 to 86585097 14 - TSS region transcription start site region 109859
Tssr109860 11 86585124 to 86585145 21 - TSS region transcription start site region 109860
Tssr109861 11 86585218 to 86585255 37 - TSS region transcription start site region 109861
Tssr109862 11 86585441 to 86585454 13 - TSS region transcription start site region 109862
Tssr109863 11 86586208 to 86586221 13 - TSS region transcription start site region 109863
Tssr109864 11 86586398 to 86586403 5 - TSS region transcription start site region 109864
Tssr109865 11 86586443 to 86586452 9 - TSS region transcription start site region 109865
Tssr109866 11 86586491 to 86586496 5 - TSS region transcription start site region 109866
Tssr109867 11 86586589 to 86586598 9 - TSS region transcription start site region 109867
Tssr109868 11 86586670 to 86586689 19 - TSS region transcription start site region 109868
Tssr109869 11 86586817 to 86586848 31 - TSS region transcription start site region 109869
Tssr109870 11 86586885 to 86586939 54 - TSS region transcription start site region 109870
Tssr109871 11 86586954 to 86586979 25 - TSS region transcription start site region 109871
Tssr109872 11 86586996 to 86587012 16 - TSS region transcription start site region 109872
Tssr109873 11 86587027 to 86587036 9 - TSS region transcription start site region 109873
Tssr109874 11 86587039 to 86587050 11 - TSS region transcription start site region 109874
Tssr103880 11 86587190 to 86587209 19 + TSS region transcription start site region 103880
Tssr103881 11 86587229 to 86587254 25 + TSS region transcription start site region 103881
Tssr103882 11 86587281 to 86587291 10 + TSS region transcription start site region 103882
Gm46289 11 86590528 to 86598495 7967 + lncRNA gene predicted gene, 46289
Tssr103883 11 86593260 to 86593271 11 + TSS region transcription start site region 103883
Tssr103884 11 86593285 to 86593301 16 + TSS region transcription start site region 103884
Tssr3623 11 86593307 to 86593316 9 + TSS region transcription start site region 3623
Tssr109875 11 86598611 to 86598651 40 - TSS region transcription start site region 109875
Tssr103885 11 86598767 to 86598798 31 + TSS region transcription start site region 103885
Tssr3624 11 86600042 to 86600094 52 + TSS region transcription start site region 3624
Tssr109876 11 86602223 to 86602251 28 - TSS region transcription start site region 109876
Tssr109877 11 86602253 to 86602303 50 - TSS region transcription start site region 109877
Tssr109878 11 86602334 to 86602345 11 - TSS region transcription start site region 109878
Tssr103886 11 86602361 to 86602386 25 + TSS region transcription start site region 103886
Tssr109879 11 86602361 to 86602372 11 - TSS region transcription start site region 109879
Tssr103887 11 86604013 to 86604040 27 + TSS region transcription start site region 103887
Tssr103888 11 86604057 to 86604066 9 + TSS region transcription start site region 103888
Tssr103889 11 86613338 to 86613372 34 + TSS region transcription start site region 103889
Tssr109880 11 86614282 to 86614286 4 - TSS region transcription start site region 109880
Tssr103890 11 86614655 to 86614662 7 + TSS region transcription start site region 103890
Tssr103891 11 86618799 to 86618804 5 + TSS region transcription start site region 103891
Tssr109881 11 86624286 to 86624297 11 - TSS region transcription start site region 109881
Tssr109882 11 86624392 to 86624435 43 - TSS region transcription start site region 109882
Tssr103892 11 86629630 to 86629658 28 + TSS region transcription start site region 103892
Tssr103893 11 86630241 to 86630246 5 + TSS region transcription start site region 103893
Gm11478 11 86630428 to 86631026 598 - pseudogene predicted gene 11478
Tssr109883 11 86631062 to 86631064 2 - TSS region transcription start site region 109883
Tssr109884 11 86635511 to 86635535 24 - TSS region transcription start site region 109884
Tssr103894 11 86646807 to 86646852 45 + TSS region transcription start site region 103894
Tssr109885 11 86648231 to 86648245 14 - TSS region transcription start site region 109885
Tssr109886 11 86671169 to 86671186 17 - TSS region transcription start site region 109886
Cpgi3476 11 86683446 to 86684243 797 CpG island CpG island 3476
Tssr109887 11 86683499 to 86683548 49 - TSS region transcription start site region 109887
Tssr109888 11 86683761 to 86683847 86 - TSS region transcription start site region 109888
Tssr103895 11 86683886 to 86683897 11 + TSS region transcription start site region 103895
Tssr109889 11 86683975 to 86683986 11 - TSS region transcription start site region 109889
Ptrh2 11 86683985 to 86692457 8472 + protein coding gene peptidyl-tRNA hydrolase 2
Tssr103896 11 86684034 to 86684089 55 + TSS region transcription start site region 103896
Tssr109890 11 86688780 to 86688785 5 - TSS region transcription start site region 109890
Cltc 11 86694610 to 86757742 63132 - protein coding gene clathrin, heavy polypeptide (Hc)
Tssr109891 11 86694990 to 86695006 16 - TSS region transcription start site region 109891
Tssr109892 11 86695064 to 86695090 26 - TSS region transcription start site region 109892
Tssr109893 11 86695326 to 86695347 21 - TSS region transcription start site region 109893
Tssr109894 11 86695353 to 86695366 13 - TSS region transcription start site region 109894
Tssr109895 11 86704173 to 86704219 46 - TSS region transcription start site region 109895
Tssr109896 11 86704956 to 86704978 22 - TSS region transcription start site region 109896
Tssr109897 11 86705171 to 86705218 47 - TSS region transcription start site region 109897
Tssr109898 11 86705219 to 86705247 28 - TSS region transcription start site region 109898