Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86374042-86595299

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38937 11 86360012 to 86384099 24087 - lncRNA gene predicted gene, 38937
Gm33528 11 86384243 to 86387227 2984 + lncRNA gene predicted gene, 33528
Gm18286 11 86404706 to 86405222 516 - pseudogene predicted gene, 18286
Gm23667 11 86408826 to 86408945 119 + rRNA gene predicted gene, 23667
Gm26439 11 86437310 to 86437415 105 - snRNA gene predicted gene, 26439
D11Mit211 11 86449377 to 86449514 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 211
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876
D11Wsu48e 11 86572467 to 86572722 255 DNA segment DNA segment, Chr 11, Wayne State University 48, expressed
Tssr109851 11 86577284 to 86577290 6 - TSS region transcription start site region 109851
Tssr103877 11 86577434 to 86577460 26 + TSS region transcription start site region 103877
Tssr103878 11 86577523 to 86577537 14 + TSS region transcription start site region 103878
Gm9975 11 86578495 to 86580768 2273 unclassified non-coding RNA gene predicted gene 9975
Tssr3622 11 86579101 to 86579107 6 + TSS region transcription start site region 3622
Tssr103879 11 86579152 to 86579178 26 + TSS region transcription start site region 103879
Tssr109852 11 86580432 to 86580437 5 - TSS region transcription start site region 109852
2210402C17Rik 11 86581200 to 86581693 493 unclassified gene RIKEN cDNA 2210402C17 gene
Tssr109853 11 86581365 to 86581369 4 - TSS region transcription start site region 109853
Vmp1 11 86583854 to 86683822 99968 - protein coding gene vacuole membrane protein 1
Mir21a 11 86584067 to 86584158 91 - miRNA gene microRNA 21a
Tssr109854 11 86584424 to 86584433 9 - TSS region transcription start site region 109854
Tssr109855 11 86584509 to 86584560 51 - TSS region transcription start site region 109855
Tssr109856 11 86584683 to 86584698 15 - TSS region transcription start site region 109856
Tssr109857 11 86585021 to 86585041 20 - TSS region transcription start site region 109857
Tssr109858 11 86585042 to 86585059 17 - TSS region transcription start site region 109858
Tssr109859 11 86585083 to 86585097 14 - TSS region transcription start site region 109859
Tssr109860 11 86585124 to 86585145 21 - TSS region transcription start site region 109860
Tssr109861 11 86585218 to 86585255 37 - TSS region transcription start site region 109861
Tssr109862 11 86585441 to 86585454 13 - TSS region transcription start site region 109862
Tssr109863 11 86586208 to 86586221 13 - TSS region transcription start site region 109863
Tssr109864 11 86586398 to 86586403 5 - TSS region transcription start site region 109864
Tssr109865 11 86586443 to 86586452 9 - TSS region transcription start site region 109865
Tssr109866 11 86586491 to 86586496 5 - TSS region transcription start site region 109866
Tssr109867 11 86586589 to 86586598 9 - TSS region transcription start site region 109867
Tssr109868 11 86586670 to 86586689 19 - TSS region transcription start site region 109868
Tssr109869 11 86586817 to 86586848 31 - TSS region transcription start site region 109869
Tssr109870 11 86586885 to 86586939 54 - TSS region transcription start site region 109870
Tssr109871 11 86586954 to 86586979 25 - TSS region transcription start site region 109871
Tssr109872 11 86586996 to 86587012 16 - TSS region transcription start site region 109872
Tssr109873 11 86587027 to 86587036 9 - TSS region transcription start site region 109873
Tssr109874 11 86587039 to 86587050 11 - TSS region transcription start site region 109874
Tssr103880 11 86587190 to 86587209 19 + TSS region transcription start site region 103880
Tssr103881 11 86587229 to 86587254 25 + TSS region transcription start site region 103881
Tssr103882 11 86587281 to 86587291 10 + TSS region transcription start site region 103882
Gm46289 11 86590528 to 86598495 7967 + lncRNA gene predicted gene, 46289
Tssr103883 11 86593260 to 86593271 11 + TSS region transcription start site region 103883
Tssr103884 11 86593285 to 86593301 16 + TSS region transcription start site region 103884
Tssr3623 11 86593307 to 86593316 9 + TSS region transcription start site region 3623