Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86349377-86549514

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med13 11 86267033 to 86357602 90569 - protein coding gene mediator complex subunit 13
Tssr109838 11 86352117 to 86352118 1 - TSS region transcription start site region 109838
Tssr109839 11 86356129 to 86356132 3 - TSS region transcription start site region 109839
Cpgi3473 11 86357202 to 86358545 1343 CpG island CpG island 3473
Tssr109840 11 86357346 to 86357385 39 - TSS region transcription start site region 109840
Tssr109841 11 86357570 to 86357614 44 - TSS region transcription start site region 109841
Tssr109842 11 86357910 to 86357922 12 - TSS region transcription start site region 109842
Tssr109843 11 86358167 to 86358172 5 - TSS region transcription start site region 109843
Tssr109844 11 86358183 to 86358194 11 - TSS region transcription start site region 109844
Tssr109845 11 86358218 to 86358227 9 - TSS region transcription start site region 109845
Tssr109846 11 86358236 to 86358259 23 - TSS region transcription start site region 109846
Tssr109847 11 86358284 to 86358322 38 - TSS region transcription start site region 109847
Gm38937 11 86360012 to 86384099 24087 - lncRNA gene predicted gene, 38937
Gm33528 11 86384243 to 86387227 2984 + lncRNA gene predicted gene, 33528
Gm18286 11 86404706 to 86405222 516 - pseudogene predicted gene, 18286
Gm23667 11 86408826 to 86408945 119 + rRNA gene predicted gene, 23667
Gm26439 11 86437310 to 86437415 105 - snRNA gene predicted gene, 26439
D11Mit211 11 86449377 to 86449514 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 211
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876