Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86052086-86462781

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brip1 11 86058138 to 86201193 143055 - protein coding gene BRCA1 interacting protein C-terminal helicase 1
Tssr109819 11 86087897 to 86087903 6 - TSS region transcription start site region 109819
Tssr109820 11 86173099 to 86173102 3 - TSS region transcription start site region 109820
Atp5l-ps2 11 86185329 to 86185642 313 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2
Cpgi3471 11 86200821 to 86201882 1061 CpG island CpG island 3471
Tssr109821 11 86201144 to 86201200 56 - TSS region transcription start site region 109821
Tssr103865 11 86201332 to 86201399 67 + TSS region transcription start site region 103865
Brip1os 11 86201370 to 86304443 103073 + antisense lncRNA gene BRCA1 interacting protein C-terminal helicase 1, opposite strand
Tssr103866 11 86201425 to 86201444 19 + TSS region transcription start site region 103866
Tssr109822 11 86201587 to 86201610 23 - TSS region transcription start site region 109822
Tssr109823 11 86201612 to 86201623 11 - TSS region transcription start site region 109823
Ints2 11 86210681 to 86257575 46894 - protein coding gene integrator complex subunit 2
Tssr103867 11 86212104 to 86212108 4 + TSS region transcription start site region 103867
Tssr109824 11 86232147 to 86232179 32 - TSS region transcription start site region 109824
Cpgi3472 11 86257086 to 86257781 695 CpG island CpG island 3472
Tssr109825 11 86257417 to 86257419 2 - TSS region transcription start site region 109825
Tssr109826 11 86257532 to 86257547 15 - TSS region transcription start site region 109826
Tssr109827 11 86257553 to 86257572 19 - TSS region transcription start site region 109827
Tssr109828 11 86257579 to 86257590 11 - TSS region transcription start site region 109828
n-TQttg2 11 86262168 to 86262239 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon TTG)
Med13 11 86267033 to 86357602 90569 - protein coding gene mediator complex subunit 13
Tssr109829 11 86268131 to 86268149 18 - TSS region transcription start site region 109829
Tssr109830 11 86268548 to 86268565 17 - TSS region transcription start site region 109830
Tssr109831 11 86286475 to 86286482 7 - TSS region transcription start site region 109831
Tssr109832 11 86301154 to 86301173 19 - TSS region transcription start site region 109832
Tssr109833 11 86304694 to 86304700 6 - TSS region transcription start site region 109833
Tssr109834 11 86304725 to 86304739 14 - TSS region transcription start site region 109834
Tssr109835 11 86306438 to 86306443 5 - TSS region transcription start site region 109835
Tssr109836 11 86328517 to 86328526 9 - TSS region transcription start site region 109836
Gm25427 11 86333206 to 86333308 102 + unclassified non-coding RNA gene predicted gene, 25427
Tssr109837 11 86349047 to 86349048 1 - TSS region transcription start site region 109837
Tssr109838 11 86352117 to 86352118 1 - TSS region transcription start site region 109838
Tssr109839 11 86356129 to 86356132 3 - TSS region transcription start site region 109839
Cpgi3473 11 86357202 to 86358545 1343 CpG island CpG island 3473
Tssr109840 11 86357346 to 86357385 39 - TSS region transcription start site region 109840
Tssr109841 11 86357570 to 86357614 44 - TSS region transcription start site region 109841
Tssr109842 11 86357910 to 86357922 12 - TSS region transcription start site region 109842
Tssr109843 11 86358167 to 86358172 5 - TSS region transcription start site region 109843
Tssr109844 11 86358183 to 86358194 11 - TSS region transcription start site region 109844
Tssr109845 11 86358218 to 86358227 9 - TSS region transcription start site region 109845
Tssr109846 11 86358236 to 86358259 23 - TSS region transcription start site region 109846
Tssr109847 11 86358284 to 86358322 38 - TSS region transcription start site region 109847
Gm38937 11 86360012 to 86384099 24087 - lncRNA gene predicted gene, 38937
Gm33528 11 86384243 to 86387227 2984 + lncRNA gene predicted gene, 33528
Gm18286 11 86404706 to 86405222 516 - pseudogene predicted gene, 18286
Gm23667 11 86408826 to 86408945 119 + rRNA gene predicted gene, 23667
Gm26439 11 86437310 to 86437415 105 - snRNA gene predicted gene, 26439
D11Mit211 11 86449377 to 86449514 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 211