Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:85902897-86272903

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbx4 11 85886422 to 85916097 29675 + protein coding gene T-box 4
Cpgi3469 11 85926446 to 85926649 203 CpG island CpG island 3469
Tssr109818 11 85929839 to 85929850 11 - TSS region transcription start site region 109818
Gm11443 11 85950495 to 85950973 478 + pseudogene predicted gene 11443
Cpgi3470 11 85976686 to 85976920 234 CpG island CpG island 3470
D11Mit165 11 85983302 to 85983443 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 165
Gm20759 11 86002658 to 86024350 21692 - lncRNA gene predicted gene, 20759
Brip1 11 86058138 to 86201193 143055 - protein coding gene BRCA1 interacting protein C-terminal helicase 1
Tssr109819 11 86087897 to 86087903 6 - TSS region transcription start site region 109819
Tssr109820 11 86173099 to 86173102 3 - TSS region transcription start site region 109820
Atp5l-ps2 11 86185329 to 86185642 313 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2
Cpgi3471 11 86200821 to 86201882 1061 CpG island CpG island 3471
Tssr109821 11 86201144 to 86201200 56 - TSS region transcription start site region 109821
Tssr103865 11 86201332 to 86201399 67 + TSS region transcription start site region 103865
Brip1os 11 86201370 to 86304443 103073 + antisense lncRNA gene BRCA1 interacting protein C-terminal helicase 1, opposite strand
Tssr103866 11 86201425 to 86201444 19 + TSS region transcription start site region 103866
Tssr109822 11 86201587 to 86201610 23 - TSS region transcription start site region 109822
Tssr109823 11 86201612 to 86201623 11 - TSS region transcription start site region 109823
Ints2 11 86210681 to 86257575 46894 - protein coding gene integrator complex subunit 2
Tssr103867 11 86212104 to 86212108 4 + TSS region transcription start site region 103867
Tssr109824 11 86232147 to 86232179 32 - TSS region transcription start site region 109824
Cpgi3472 11 86257086 to 86257781 695 CpG island CpG island 3472
Tssr109825 11 86257417 to 86257419 2 - TSS region transcription start site region 109825
Tssr109826 11 86257532 to 86257547 15 - TSS region transcription start site region 109826
Tssr109827 11 86257553 to 86257572 19 - TSS region transcription start site region 109827
Tssr109828 11 86257579 to 86257590 11 - TSS region transcription start site region 109828
n-TQttg2 11 86262168 to 86262239 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon TTG)
Med13 11 86267033 to 86357602 90569 - protein coding gene mediator complex subunit 13
Tssr109829 11 86268131 to 86268149 18 - TSS region transcription start site region 109829
Tssr109830 11 86268548 to 86268565 17 - TSS region transcription start site region 109830