Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:8580955-9031725

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tns3 11 8431652 to 8664535 232883 - protein coding gene tensin 3
Tssr106826 11 8587258 to 8587306 48 - TSS region transcription start site region 106826
Tssr106827 11 8589438 to 8589441 3 - TSS region transcription start site region 106827
Tssr100307 11 8589807 to 8589822 15 + TSS region transcription start site region 100307
Tssr100308 11 8594835 to 8594852 17 + TSS region transcription start site region 100308
Tssr106828 11 8600718 to 8600747 29 - TSS region transcription start site region 106828
Tssr106829 11 8600756 to 8600766 10 - TSS region transcription start site region 106829
Tssr106830 11 8600782 to 8600803 21 - TSS region transcription start site region 106830
Tssr106831 11 8601131 to 8601144 13 - TSS region transcription start site region 106831
Tssr100309 11 8605082 to 8605093 11 + TSS region transcription start site region 100309
Tssr106832 11 8605213 to 8605232 19 - TSS region transcription start site region 106832
Tssr106833 11 8605239 to 8605257 18 - TSS region transcription start site region 106833
Tssr106834 11 8605291 to 8605302 11 - TSS region transcription start site region 106834
Tssr106835 11 8612229 to 8612236 7 - TSS region transcription start site region 106835
Tssr106836 11 8622552 to 8622585 33 - TSS region transcription start site region 106836
Cpgi2574 11 8623932 to 8624930 998 CpG island CpG island 2574
Tssr106837 11 8624173 to 8624219 46 - TSS region transcription start site region 106837
Tssr106838 11 8624600 to 8624615 15 - TSS region transcription start site region 106838
Tssr106839 11 8624620 to 8624657 37 - TSS region transcription start site region 106839
Tssr106840 11 8624674 to 8624695 21 - TSS region transcription start site region 106840
Tssr106841 11 8624723 to 8624774 51 - TSS region transcription start site region 106841
Tssr106842 11 8624900 to 8624918 18 - TSS region transcription start site region 106842
Tssr106843 11 8635906 to 8635914 8 - TSS region transcription start site region 106843
D11Mit129 11 8644794 to 8644931 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 129
Tssr106844 11 8653184 to 8653188 4 - TSS region transcription start site region 106844
Tssr100310 11 8655619 to 8655656 37 + TSS region transcription start site region 100310
Cpgi2575 11 8663672 to 8664876 1204 CpG island CpG island 2575
Tssr106845 11 8664043 to 8664064 21 - TSS region transcription start site region 106845
Tssr106846 11 8664067 to 8664114 47 - TSS region transcription start site region 106846
Tssr106847 11 8664499 to 8664551 52 - TSS region transcription start site region 106847
Tssr106848 11 8664553 to 8664594 41 - TSS region transcription start site region 106848
Tssr106849 11 8664667 to 8664681 14 - TSS region transcription start site region 106849
Tssr100311 11 8708931 to 8708939 8 + TSS region transcription start site region 100311
Tssr100312 11 8722633 to 8722677 44 + TSS region transcription start site region 100312
Tssr100313 11 8773623 to 8773635 12 + TSS region transcription start site region 100313
Tssr100314 11 8773637 to 8773646 9 + TSS region transcription start site region 100314
Gm36772 11 8796577 to 8799607 3030 - lncRNA gene predicted gene, 36772
Gm11990 11 8805955 to 8806725 770 - pseudogene predicted gene 11990
Pkd1l1 11 8826708 to 8973266 146558 - protein coding gene polycystic kidney disease 1 like 1
Gm40815 11 8884173 to 8885303 1130 + pseudogene predicted gene, 40815
Gm11991 11 8884223 to 8885296 1073 - pseudogene predicted gene 11991
Tssr106850 11 8903717 to 8903727 10 - TSS region transcription start site region 106850
D11Mit226 11 8904955 to 8905093 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 226
Gm40814 11 8921301 to 8927994 6693 + protein coding gene predicted gene, 40814
Gm46271 11 8924024 to 8925221 1197 + lncRNA gene predicted gene, 46271
Hus1 11 8993137 to 9011191 18054 - protein coding gene HUS1 checkpoint clamp component
Tssr100315 11 9010675 to 9010709 34 + TSS region transcription start site region 100315
Cpgi2576 11 9010829 to 9011330 501 CpG island CpG island 2576
Tssr106851 11 9011111 to 9011164 53 - TSS region transcription start site region 106851
Sun3 11 9016054 to 9048991 32937 - protein coding gene Sad1 and UNC84 domain containing 3
Lmr6 11 9026225 to 9026374 149 QTL leishmaniasis resistance 6
Tshp9 11 9026225 to 9026374 149 QTL tooth shape 9
Skull15 11 9026225 to 9026374 149 QTL skull morphology 15
D11Mit62 11 9026225 to 9026374 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 62