Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:85686298-86086753

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103840 11 85688323 to 85688326 3 + TSS region transcription start site region 103840
Bcas3os1 11 85702200 to 85719744 17544 - antisense lncRNA gene breast carcinoma amplified sequence 3, opposite strand 1
Tssr103841 11 85713763 to 85713803 40 + TSS region transcription start site region 103841
Tssr109813 11 85719737 to 85719750 13 - TSS region transcription start site region 109813
Tssr103842 11 85739881 to 85739892 11 + TSS region transcription start site region 103842
Tssr103843 11 85739906 to 85739917 11 + TSS region transcription start site region 103843
Tssr103844 11 85739931 to 85739947 16 + TSS region transcription start site region 103844
Tssr103845 11 85739948 to 85739965 17 + TSS region transcription start site region 103845
Mir5110 11 85760616 to 85760702 86 - miRNA gene microRNA 5110
Bcas3os2 11 85766833 to 85775680 8847 - antisense lncRNA gene breast carcinoma amplified sequence 3 opposite strand 2
Tssr109814 11 85769127 to 85769138 11 - TSS region transcription start site region 109814
Tssr109815 11 85775655 to 85775688 33 - TSS region transcription start site region 109815
Gm23473 11 85778812 to 85778927 115 + rRNA gene predicted gene, 23473
2610027K06Rik 11 85791661 to 85832223 40562 - lncRNA gene RIKEN cDNA 2610027K06 gene
Tssr109816 11 85804197 to 85804218 21 - TSS region transcription start site region 109816
Tssr103846 11 85821843 to 85821852 9 + TSS region transcription start site region 103846
Tssr103847 11 85821857 to 85821865 8 + TSS region transcription start site region 103847
Tssr103848 11 85821878 to 85821893 15 + TSS region transcription start site region 103848
Tssr103849 11 85821909 to 85821949 40 + TSS region transcription start site region 103849
Tssr103850 11 85821951 to 85821958 7 + TSS region transcription start site region 103850
Tssr103851 11 85821961 to 85821968 7 + TSS region transcription start site region 103851
Cpgi3456 11 85829240 to 85830473 1233 CpG island CpG island 3456
Tssr103852 11 85830949 to 85830961 12 + TSS region transcription start site region 103852
Cpgi3457 11 85831008 to 85831367 359 CpG island CpG island 3457
Tssr103853 11 85831226 to 85831266 40 + TSS region transcription start site region 103853
Tssr103854 11 85831756 to 85831775 19 + TSS region transcription start site region 103854
Tssr103855 11 85831791 to 85831805 14 + TSS region transcription start site region 103855
Cpgi3458 11 85831837 to 85833629 1792 CpG island CpG island 3458
Tssr109817 11 85832294 to 85832310 16 - TSS region transcription start site region 109817
Tbx2 11 85832615 to 85841948 9333 + protein coding gene T-box 2
Tssr103856 11 85832761 to 85832776 15 + TSS region transcription start site region 103856
Tssr103857 11 85832801 to 85832827 26 + TSS region transcription start site region 103857
Tssr103858 11 85832839 to 85832850 11 + TSS region transcription start site region 103858
Tssr103859 11 85832925 to 85832949 24 + TSS region transcription start site region 103859
Tssr103860 11 85832967 to 85832986 19 + TSS region transcription start site region 103860
Cpgi3459 11 85834594 to 85834829 235 CpG island CpG island 3459
Cpgi3460 11 85836879 to 85838672 1793 CpG island CpG island 3460
Cpgi3461 11 85840345 to 85841169 824 CpG island CpG island 3461
Cpgi3462 11 85841766 to 85842341 575 CpG island CpG island 3462
Cpgi3463 11 85842971 to 85844850 1879 CpG island CpG island 3463
Gm11444 11 85846790 to 85850333 3543 - protein coding gene predicted gene 11444
Cpgi3464 11 85849001 to 85849316 315 CpG island CpG island 3464
Tssr103861 11 85886060 to 85886073 13 + TSS region transcription start site region 103861
Cpgi3465 11 85886298 to 85886753 455 CpG island CpG island 3465
Tssr103862 11 85886360 to 85886418 58 + TSS region transcription start site region 103862
Tbx4 11 85886422 to 85916097 29675 + protein coding gene T-box 4
Cpgi3466 11 85888362 to 85888821 459 CpG island CpG island 3466
Tssr103863 11 85889833 to 85889848 15 + TSS region transcription start site region 103863
Cpgi3467 11 85889845 to 85891079 1234 CpG island CpG island 3467
Tssr103864 11 85889981 to 85890006 25 + TSS region transcription start site region 103864
Cpgi3468 11 85894792 to 85895474 682 CpG island CpG island 3468
Cpgi3469 11 85926446 to 85926649 203 CpG island CpG island 3469
Tssr109818 11 85929839 to 85929850 11 - TSS region transcription start site region 109818
Gm11443 11 85950495 to 85950973 478 + pseudogene predicted gene 11443
Cpgi3470 11 85976686 to 85976920 234 CpG island CpG island 3470
D11Mit165 11 85983302 to 85983443 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 165
Gm20759 11 86002658 to 86024350 21692 - lncRNA gene predicted gene, 20759
Brip1 11 86058138 to 86201193 143055 - protein coding gene BRCA1 interacting protein C-terminal helicase 1