Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:85649931-85829947

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24 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103839 11 85683852 to 85683867 15 + TSS region transcription start site region 103839
Tssr103840 11 85688323 to 85688326 3 + TSS region transcription start site region 103840
Bcas3os1 11 85702200 to 85719744 17544 - antisense lncRNA gene breast carcinoma amplified sequence 3, opposite strand 1
Tssr103841 11 85713763 to 85713803 40 + TSS region transcription start site region 103841
Tssr109813 11 85719737 to 85719750 13 - TSS region transcription start site region 109813
Tssr103842 11 85739881 to 85739892 11 + TSS region transcription start site region 103842
Tssr103843 11 85739906 to 85739917 11 + TSS region transcription start site region 103843
Tssr103844 11 85739931 to 85739947 16 + TSS region transcription start site region 103844
Tssr103845 11 85739948 to 85739965 17 + TSS region transcription start site region 103845
Mir5110 11 85760616 to 85760702 86 - miRNA gene microRNA 5110
Bcas3os2 11 85766833 to 85775680 8847 - antisense lncRNA gene breast carcinoma amplified sequence 3 opposite strand 2
Tssr109814 11 85769127 to 85769138 11 - TSS region transcription start site region 109814
Tssr109815 11 85775655 to 85775688 33 - TSS region transcription start site region 109815
Gm23473 11 85778812 to 85778927 115 + rRNA gene predicted gene, 23473
2610027K06Rik 11 85791661 to 85832223 40562 - lncRNA gene RIKEN cDNA 2610027K06 gene
Tssr109816 11 85804197 to 85804218 21 - TSS region transcription start site region 109816
Tssr103846 11 85821843 to 85821852 9 + TSS region transcription start site region 103846
Tssr103847 11 85821857 to 85821865 8 + TSS region transcription start site region 103847
Tssr103848 11 85821878 to 85821893 15 + TSS region transcription start site region 103848
Tssr103849 11 85821909 to 85821949 40 + TSS region transcription start site region 103849
Tssr103850 11 85821951 to 85821958 7 + TSS region transcription start site region 103850
Tssr103851 11 85821961 to 85821968 7 + TSS region transcription start site region 103851
Cpgi3456 11 85829240 to 85830473 1233 CpG island CpG island 3456