Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:85607553-86907572

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256 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103838 11 85614820 to 85614824 4 + TSS region transcription start site region 103838
Tssr103839 11 85683852 to 85683867 15 + TSS region transcription start site region 103839
Tssr103840 11 85688323 to 85688326 3 + TSS region transcription start site region 103840
Bcas3os1 11 85702200 to 85719744 17544 - antisense lncRNA gene breast carcinoma amplified sequence 3, opposite strand 1
Tssr103841 11 85713763 to 85713803 40 + TSS region transcription start site region 103841
Tssr109813 11 85719737 to 85719750 13 - TSS region transcription start site region 109813
Tssr103842 11 85739881 to 85739892 11 + TSS region transcription start site region 103842
Tssr103843 11 85739906 to 85739917 11 + TSS region transcription start site region 103843
Tssr103844 11 85739931 to 85739947 16 + TSS region transcription start site region 103844
Tssr103845 11 85739948 to 85739965 17 + TSS region transcription start site region 103845
Mir5110 11 85760616 to 85760702 86 - miRNA gene microRNA 5110
Bcas3os2 11 85766833 to 85775680 8847 - antisense lncRNA gene breast carcinoma amplified sequence 3 opposite strand 2
Tssr109814 11 85769127 to 85769138 11 - TSS region transcription start site region 109814
Tssr109815 11 85775655 to 85775688 33 - TSS region transcription start site region 109815
Gm23473 11 85778812 to 85778927 115 + rRNA gene predicted gene, 23473
2610027K06Rik 11 85791661 to 85832223 40562 - lncRNA gene RIKEN cDNA 2610027K06 gene
Tssr109816 11 85804197 to 85804218 21 - TSS region transcription start site region 109816
Tssr103846 11 85821843 to 85821852 9 + TSS region transcription start site region 103846
Tssr103847 11 85821857 to 85821865 8 + TSS region transcription start site region 103847
Tssr103848 11 85821878 to 85821893 15 + TSS region transcription start site region 103848
Tssr103849 11 85821909 to 85821949 40 + TSS region transcription start site region 103849
Tssr103850 11 85821951 to 85821958 7 + TSS region transcription start site region 103850
Tssr103851 11 85821961 to 85821968 7 + TSS region transcription start site region 103851
Cpgi3456 11 85829240 to 85830473 1233 CpG island CpG island 3456
Tssr103852 11 85830949 to 85830961 12 + TSS region transcription start site region 103852
Cpgi3457 11 85831008 to 85831367 359 CpG island CpG island 3457
Tssr103853 11 85831226 to 85831266 40 + TSS region transcription start site region 103853
Tssr103854 11 85831756 to 85831775 19 + TSS region transcription start site region 103854
Tssr103855 11 85831791 to 85831805 14 + TSS region transcription start site region 103855
Cpgi3458 11 85831837 to 85833629 1792 CpG island CpG island 3458
Tssr109817 11 85832294 to 85832310 16 - TSS region transcription start site region 109817
Tbx2 11 85832615 to 85841948 9333 + protein coding gene T-box 2
Tssr103856 11 85832761 to 85832776 15 + TSS region transcription start site region 103856
Tssr103857 11 85832801 to 85832827 26 + TSS region transcription start site region 103857
Tssr103858 11 85832839 to 85832850 11 + TSS region transcription start site region 103858
Tssr103859 11 85832925 to 85832949 24 + TSS region transcription start site region 103859
Tssr103860 11 85832967 to 85832986 19 + TSS region transcription start site region 103860
Cpgi3459 11 85834594 to 85834829 235 CpG island CpG island 3459
Cpgi3460 11 85836879 to 85838672 1793 CpG island CpG island 3460
Cpgi3461 11 85840345 to 85841169 824 CpG island CpG island 3461
Cpgi3462 11 85841766 to 85842341 575 CpG island CpG island 3462
Cpgi3463 11 85842971 to 85844850 1879 CpG island CpG island 3463
Gm11444 11 85846790 to 85850333 3543 - protein coding gene predicted gene 11444
Cpgi3464 11 85849001 to 85849316 315 CpG island CpG island 3464
Tssr103861 11 85886060 to 85886073 13 + TSS region transcription start site region 103861
Cpgi3465 11 85886298 to 85886753 455 CpG island CpG island 3465
Tssr103862 11 85886360 to 85886418 58 + TSS region transcription start site region 103862
Tbx4 11 85886422 to 85916097 29675 + protein coding gene T-box 4
Cpgi3466 11 85888362 to 85888821 459 CpG island CpG island 3466
Tssr103863 11 85889833 to 85889848 15 + TSS region transcription start site region 103863
Cpgi3467 11 85889845 to 85891079 1234 CpG island CpG island 3467
Tssr103864 11 85889981 to 85890006 25 + TSS region transcription start site region 103864
Cpgi3468 11 85894792 to 85895474 682 CpG island CpG island 3468
Cpgi3469 11 85926446 to 85926649 203 CpG island CpG island 3469
Tssr109818 11 85929839 to 85929850 11 - TSS region transcription start site region 109818
Gm11443 11 85950495 to 85950973 478 + pseudogene predicted gene 11443
Cpgi3470 11 85976686 to 85976920 234 CpG island CpG island 3470
D11Mit165 11 85983302 to 85983443 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 165
Gm20759 11 86002658 to 86024350 21692 - lncRNA gene predicted gene, 20759
Brip1 11 86058138 to 86201193 143055 - protein coding gene BRCA1 interacting protein C-terminal helicase 1
Tssr109819 11 86087897 to 86087903 6 - TSS region transcription start site region 109819
Tssr109820 11 86173099 to 86173102 3 - TSS region transcription start site region 109820
Atp5l-ps2 11 86185329 to 86185642 313 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2
Cpgi3471 11 86200821 to 86201882 1061 CpG island CpG island 3471
Tssr109821 11 86201144 to 86201200 56 - TSS region transcription start site region 109821
Tssr103865 11 86201332 to 86201399 67 + TSS region transcription start site region 103865
Brip1os 11 86201370 to 86304443 103073 + antisense lncRNA gene BRCA1 interacting protein C-terminal helicase 1, opposite strand
Tssr103866 11 86201425 to 86201444 19 + TSS region transcription start site region 103866
Tssr109822 11 86201587 to 86201610 23 - TSS region transcription start site region 109822
Tssr109823 11 86201612 to 86201623 11 - TSS region transcription start site region 109823
Ints2 11 86210681 to 86257575 46894 - protein coding gene integrator complex subunit 2
Tssr103867 11 86212104 to 86212108 4 + TSS region transcription start site region 103867
Tssr109824 11 86232147 to 86232179 32 - TSS region transcription start site region 109824
Cpgi3472 11 86257086 to 86257781 695 CpG island CpG island 3472
Tssr109825 11 86257417 to 86257419 2 - TSS region transcription start site region 109825
Tssr109826 11 86257532 to 86257547 15 - TSS region transcription start site region 109826
Tssr109827 11 86257553 to 86257572 19 - TSS region transcription start site region 109827
Tssr109828 11 86257579 to 86257590 11 - TSS region transcription start site region 109828
n-TQttg2 11 86262168 to 86262239 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon TTG)
Med13 11 86267033 to 86357602 90569 - protein coding gene mediator complex subunit 13
Tssr109829 11 86268131 to 86268149 18 - TSS region transcription start site region 109829
Tssr109830 11 86268548 to 86268565 17 - TSS region transcription start site region 109830
Tssr109831 11 86286475 to 86286482 7 - TSS region transcription start site region 109831
Tssr109832 11 86301154 to 86301173 19 - TSS region transcription start site region 109832
Tssr109833 11 86304694 to 86304700 6 - TSS region transcription start site region 109833
Tssr109834 11 86304725 to 86304739 14 - TSS region transcription start site region 109834
Tssr109835 11 86306438 to 86306443 5 - TSS region transcription start site region 109835
Tssr109836 11 86328517 to 86328526 9 - TSS region transcription start site region 109836
Gm25427 11 86333206 to 86333308 102 + unclassified non-coding RNA gene predicted gene, 25427
Tssr109837 11 86349047 to 86349048 1 - TSS region transcription start site region 109837
Tssr109838 11 86352117 to 86352118 1 - TSS region transcription start site region 109838
Tssr109839 11 86356129 to 86356132 3 - TSS region transcription start site region 109839
Cpgi3473 11 86357202 to 86358545 1343 CpG island CpG island 3473
Tssr109840 11 86357346 to 86357385 39 - TSS region transcription start site region 109840
Tssr109841 11 86357570 to 86357614 44 - TSS region transcription start site region 109841
Tssr109842 11 86357910 to 86357922 12 - TSS region transcription start site region 109842
Tssr109843 11 86358167 to 86358172 5 - TSS region transcription start site region 109843
Tssr109844 11 86358183 to 86358194 11 - TSS region transcription start site region 109844
Tssr109845 11 86358218 to 86358227 9 - TSS region transcription start site region 109845
Tssr109846 11 86358236 to 86358259 23 - TSS region transcription start site region 109846
Tssr109847 11 86358284 to 86358322 38 - TSS region transcription start site region 109847
Gm38937 11 86360012 to 86384099 24087 - lncRNA gene predicted gene, 38937
Gm33528 11 86384243 to 86387227 2984 + lncRNA gene predicted gene, 33528
Gm18286 11 86404706 to 86405222 516 - pseudogene predicted gene, 18286
Gm23667 11 86408826 to 86408945 119 + rRNA gene predicted gene, 23667
Gm26439 11 86437310 to 86437415 105 - snRNA gene predicted gene, 26439
D11Mit211 11 86449377 to 86449514 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 211
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876
D11Wsu48e 11 86572467 to 86572722 255 DNA segment DNA segment, Chr 11, Wayne State University 48, expressed
Tssr109851 11 86577284 to 86577290 6 - TSS region transcription start site region 109851
Tssr103877 11 86577434 to 86577460 26 + TSS region transcription start site region 103877
Tssr103878 11 86577523 to 86577537 14 + TSS region transcription start site region 103878
Gm9975 11 86578495 to 86580768 2273 unclassified non-coding RNA gene predicted gene 9975
Tssr3622 11 86579101 to 86579107 6 + TSS region transcription start site region 3622
Tssr103879 11 86579152 to 86579178 26 + TSS region transcription start site region 103879
Tssr109852 11 86580432 to 86580437 5 - TSS region transcription start site region 109852
2210402C17Rik 11 86581200 to 86581693 493 unclassified gene RIKEN cDNA 2210402C17 gene
Tssr109853 11 86581365 to 86581369 4 - TSS region transcription start site region 109853
Vmp1 11 86583854 to 86683822 99968 - protein coding gene vacuole membrane protein 1
Mir21a 11 86584067 to 86584158 91 - miRNA gene microRNA 21a
Tssr109854 11 86584424 to 86584433 9 - TSS region transcription start site region 109854
Tssr109855 11 86584509 to 86584560 51 - TSS region transcription start site region 109855
Tssr109856 11 86584683 to 86584698 15 - TSS region transcription start site region 109856
Tssr109857 11 86585021 to 86585041 20 - TSS region transcription start site region 109857
Tssr109858 11 86585042 to 86585059 17 - TSS region transcription start site region 109858
Tssr109859 11 86585083 to 86585097 14 - TSS region transcription start site region 109859
Tssr109860 11 86585124 to 86585145 21 - TSS region transcription start site region 109860
Tssr109861 11 86585218 to 86585255 37 - TSS region transcription start site region 109861
Tssr109862 11 86585441 to 86585454 13 - TSS region transcription start site region 109862
Tssr109863 11 86586208 to 86586221 13 - TSS region transcription start site region 109863
Tssr109864 11 86586398 to 86586403 5 - TSS region transcription start site region 109864
Tssr109865 11 86586443 to 86586452 9 - TSS region transcription start site region 109865
Tssr109866 11 86586491 to 86586496 5 - TSS region transcription start site region 109866
Tssr109867 11 86586589 to 86586598 9 - TSS region transcription start site region 109867
Tssr109868 11 86586670 to 86586689 19 - TSS region transcription start site region 109868
Tssr109869 11 86586817 to 86586848 31 - TSS region transcription start site region 109869
Tssr109870 11 86586885 to 86586939 54 - TSS region transcription start site region 109870
Tssr109871 11 86586954 to 86586979 25 - TSS region transcription start site region 109871
Tssr109872 11 86586996 to 86587012 16 - TSS region transcription start site region 109872
Tssr109873 11 86587027 to 86587036 9 - TSS region transcription start site region 109873
Tssr109874 11 86587039 to 86587050 11 - TSS region transcription start site region 109874
Tssr103880 11 86587190 to 86587209 19 + TSS region transcription start site region 103880
Tssr103881 11 86587229 to 86587254 25 + TSS region transcription start site region 103881
Tssr103882 11 86587281 to 86587291 10 + TSS region transcription start site region 103882
Gm46289 11 86590528 to 86598495 7967 + lncRNA gene predicted gene, 46289
Tssr103883 11 86593260 to 86593271 11 + TSS region transcription start site region 103883
Tssr103884 11 86593285 to 86593301 16 + TSS region transcription start site region 103884
Tssr3623 11 86593307 to 86593316 9 + TSS region transcription start site region 3623
Tssr109875 11 86598611 to 86598651 40 - TSS region transcription start site region 109875
Tssr103885 11 86598767 to 86598798 31 + TSS region transcription start site region 103885
Tssr3624 11 86600042 to 86600094 52 + TSS region transcription start site region 3624
Tssr109876 11 86602223 to 86602251 28 - TSS region transcription start site region 109876
Tssr109877 11 86602253 to 86602303 50 - TSS region transcription start site region 109877
Tssr109878 11 86602334 to 86602345 11 - TSS region transcription start site region 109878
Tssr109879 11 86602361 to 86602372 11 - TSS region transcription start site region 109879
Tssr103886 11 86602361 to 86602386 25 + TSS region transcription start site region 103886
Tssr103887 11 86604013 to 86604040 27 + TSS region transcription start site region 103887
Tssr103888 11 86604057 to 86604066 9 + TSS region transcription start site region 103888
Tssr103889 11 86613338 to 86613372 34 + TSS region transcription start site region 103889
Tssr109880 11 86614282 to 86614286 4 - TSS region transcription start site region 109880
Tssr103890 11 86614655 to 86614662 7 + TSS region transcription start site region 103890
Tssr103891 11 86618799 to 86618804 5 + TSS region transcription start site region 103891
Tssr109881 11 86624286 to 86624297 11 - TSS region transcription start site region 109881
Tssr109882 11 86624392 to 86624435 43 - TSS region transcription start site region 109882
Tssr103892 11 86629630 to 86629658 28 + TSS region transcription start site region 103892
Tssr103893 11 86630241 to 86630246 5 + TSS region transcription start site region 103893
Gm11478 11 86630428 to 86631026 598 - pseudogene predicted gene 11478
Tssr109883 11 86631062 to 86631064 2 - TSS region transcription start site region 109883
Tssr109884 11 86635511 to 86635535 24 - TSS region transcription start site region 109884
Tssr103894 11 86646807 to 86646852 45 + TSS region transcription start site region 103894
Tssr109885 11 86648231 to 86648245 14 - TSS region transcription start site region 109885
Tssr109886 11 86671169 to 86671186 17 - TSS region transcription start site region 109886
Cpgi3476 11 86683446 to 86684243 797 CpG island CpG island 3476
Tssr109887 11 86683499 to 86683548 49 - TSS region transcription start site region 109887
Tssr109888 11 86683761 to 86683847 86 - TSS region transcription start site region 109888
Tssr103895 11 86683886 to 86683897 11 + TSS region transcription start site region 103895
Tssr109889 11 86683975 to 86683986 11 - TSS region transcription start site region 109889
Ptrh2 11 86683985 to 86692457 8472 + protein coding gene peptidyl-tRNA hydrolase 2
Tssr103896 11 86684034 to 86684089 55 + TSS region transcription start site region 103896
Tssr109890 11 86688780 to 86688785 5 - TSS region transcription start site region 109890
Cltc 11 86694610 to 86757742 63132 - protein coding gene clathrin, heavy polypeptide (Hc)
Tssr109891 11 86694990 to 86695006 16 - TSS region transcription start site region 109891
Tssr109892 11 86695064 to 86695090 26 - TSS region transcription start site region 109892