Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:8556577-9039607

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tns3 11 8431652 to 8664535 232883 - protein coding gene tensin 3
Tssr106809 11 8558399 to 8558410 11 - TSS region transcription start site region 106809
Tssr106810 11 8558974 to 8558985 11 - TSS region transcription start site region 106810
Tssr100306 11 8569849 to 8569858 9 + TSS region transcription start site region 100306
Tssr106811 11 8573446 to 8573452 6 - TSS region transcription start site region 106811
Tssr106812 11 8575315 to 8575363 48 - TSS region transcription start site region 106812
Tssr106813 11 8575589 to 8575592 3 - TSS region transcription start site region 106813
Tssr106814 11 8575613 to 8575633 20 - TSS region transcription start site region 106814
Tssr106815 11 8575655 to 8575666 11 - TSS region transcription start site region 106815
Tssr106816 11 8577232 to 8577247 15 - TSS region transcription start site region 106816
Tssr106817 11 8579179 to 8579184 5 - TSS region transcription start site region 106817
Tssr106818 11 8579204 to 8579212 8 - TSS region transcription start site region 106818
Tssr106819 11 8579245 to 8579267 22 - TSS region transcription start site region 106819
Tssr106820 11 8579405 to 8579430 25 - TSS region transcription start site region 106820
Tssr106821 11 8579462 to 8579504 42 - TSS region transcription start site region 106821
Tssr106822 11 8579702 to 8579720 18 - TSS region transcription start site region 106822
Tssr106823 11 8579811 to 8579820 9 - TSS region transcription start site region 106823
Tssr106824 11 8579850 to 8579858 8 - TSS region transcription start site region 106824
Tssr106825 11 8579959 to 8579965 6 - TSS region transcription start site region 106825
Tssr106826 11 8587258 to 8587306 48 - TSS region transcription start site region 106826
Tssr106827 11 8589438 to 8589441 3 - TSS region transcription start site region 106827
Tssr100307 11 8589807 to 8589822 15 + TSS region transcription start site region 100307
Tssr100308 11 8594835 to 8594852 17 + TSS region transcription start site region 100308
Tssr106828 11 8600718 to 8600747 29 - TSS region transcription start site region 106828
Tssr106829 11 8600756 to 8600766 10 - TSS region transcription start site region 106829
Tssr106830 11 8600782 to 8600803 21 - TSS region transcription start site region 106830
Tssr106831 11 8601131 to 8601144 13 - TSS region transcription start site region 106831
Tssr100309 11 8605082 to 8605093 11 + TSS region transcription start site region 100309
Tssr106832 11 8605213 to 8605232 19 - TSS region transcription start site region 106832
Tssr106833 11 8605239 to 8605257 18 - TSS region transcription start site region 106833
Tssr106834 11 8605291 to 8605302 11 - TSS region transcription start site region 106834
Tssr106835 11 8612229 to 8612236 7 - TSS region transcription start site region 106835
Tssr106836 11 8622552 to 8622585 33 - TSS region transcription start site region 106836
Cpgi2574 11 8623932 to 8624930 998 CpG island CpG island 2574
Tssr106837 11 8624173 to 8624219 46 - TSS region transcription start site region 106837
Tssr106838 11 8624600 to 8624615 15 - TSS region transcription start site region 106838
Tssr106839 11 8624620 to 8624657 37 - TSS region transcription start site region 106839
Tssr106840 11 8624674 to 8624695 21 - TSS region transcription start site region 106840
Tssr106841 11 8624723 to 8624774 51 - TSS region transcription start site region 106841
Tssr106842 11 8624900 to 8624918 18 - TSS region transcription start site region 106842
Tssr106843 11 8635906 to 8635914 8 - TSS region transcription start site region 106843
D11Mit129 11 8644794 to 8644931 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 129
Tssr106844 11 8653184 to 8653188 4 - TSS region transcription start site region 106844
Tssr100310 11 8655619 to 8655656 37 + TSS region transcription start site region 100310
Cpgi2575 11 8663672 to 8664876 1204 CpG island CpG island 2575
Tssr106845 11 8664043 to 8664064 21 - TSS region transcription start site region 106845
Tssr106846 11 8664067 to 8664114 47 - TSS region transcription start site region 106846
Tssr106847 11 8664499 to 8664551 52 - TSS region transcription start site region 106847
Tssr106848 11 8664553 to 8664594 41 - TSS region transcription start site region 106848
Tssr106849 11 8664667 to 8664681 14 - TSS region transcription start site region 106849
Tssr100311 11 8708931 to 8708939 8 + TSS region transcription start site region 100311
Tssr100312 11 8722633 to 8722677 44 + TSS region transcription start site region 100312
Tssr100313 11 8773623 to 8773635 12 + TSS region transcription start site region 100313
Tssr100314 11 8773637 to 8773646 9 + TSS region transcription start site region 100314
Gm36772 11 8796577 to 8799607 3030 - lncRNA gene predicted gene, 36772
Gm11990 11 8805955 to 8806725 770 - pseudogene predicted gene 11990
Pkd1l1 11 8826708 to 8973266 146558 - protein coding gene polycystic kidney disease 1 like 1
Gm40815 11 8884173 to 8885303 1130 + pseudogene predicted gene, 40815
Gm11991 11 8884223 to 8885296 1073 - pseudogene predicted gene 11991
Tssr106850 11 8903717 to 8903727 10 - TSS region transcription start site region 106850
D11Mit226 11 8904955 to 8905093 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 226
Gm40814 11 8921301 to 8927994 6693 + protein coding gene predicted gene, 40814
Gm46271 11 8924024 to 8925221 1197 + lncRNA gene predicted gene, 46271
Hus1 11 8993137 to 9011191 18054 - protein coding gene HUS1 checkpoint clamp component
Tssr100315 11 9010675 to 9010709 34 + TSS region transcription start site region 100315
Cpgi2576 11 9010829 to 9011330 501 CpG island CpG island 2576
Tssr106851 11 9011111 to 9011164 53 - TSS region transcription start site region 106851
Sun3 11 9016054 to 9048991 32937 - protein coding gene Sad1 and UNC84 domain containing 3
Tshp9 11 9026225 to 9026374 149 QTL tooth shape 9
Skull15 11 9026225 to 9026374 149 QTL skull morphology 15
D11Mit62 11 9026225 to 9026374 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 62
Lmr6 11 9026225 to 9026374 149 QTL leishmaniasis resistance 6
Tssr106852 11 9039579 to 9039584 5 - TSS region transcription start site region 106852
Tssr106853 11 9039585 to 9039601 16 - TSS region transcription start site region 106853