Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84891254-85767071

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq10 11 36000000 to 85000000 49000000 QTL body mass index QTL 10
Skts-fp2 11 58828440 to 85175703 26347263 QTL skin tumor susceptibility in FVB and PWK 2
Myo19 11 84880192 to 84911131 30939 + protein coding gene myosin XIX
Gm23564 11 84893087 to 84893153 66 + miRNA gene predicted gene, 23564
Tssr103812 11 84901129 to 84901146 17 + TSS region transcription start site region 103812
Znhit3 11 84910950 to 84916356 5406 - protein coding gene zinc finger, HIT type 3
Cpgi3447 11 84915985 to 84916485 500 CpG island CpG island 3447
Tssr109797 11 84916234 to 84916260 26 - TSS region transcription start site region 109797
Tssr109798 11 84916338 to 84916371 33 - TSS region transcription start site region 109798
D11Mit221 11 84929345 to 84929451 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 221
Gm33028 11 84940261 to 84943855 3594 + lncRNA gene predicted gene, 33028
Gm32917 11 84943891 to 84951103 7212 - lncRNA gene predicted gene, 32917
Cpgi3448 11 84943960 to 84944153 193 CpG island CpG island 3448
Tssr109799 11 84944789 to 84944800 11 - TSS region transcription start site region 109799
Tssr103813 11 84944914 to 84944921 7 + TSS region transcription start site region 103813
Cpgi3449 11 84957521 to 84958385 864 CpG island CpG island 3449
Tssr103814 11 84957775 to 84957799 24 + TSS region transcription start site region 103814
Car4 11 84957786 to 84966044 8258 + protein coding gene carbonic anhydrase 4
Tssr103815 11 84957802 to 84957813 11 + TSS region transcription start site region 103815
Tssr103816 11 84957817 to 84957835 18 + TSS region transcription start site region 103816
D11Mit121 11 84970026 to 84970145 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 121
Usp32 11 84984437 to 85140042 155605 - protein coding gene ubiquitin specific peptidase 32
Tssr109800 11 85038348 to 85038351 3 - TSS region transcription start site region 109800
Gm9365 11 85069600 to 85073884 4284 + pseudogene predicted gene 9365
Gm11440 11 85072469 to 85072995 526 - pseudogene predicted gene 11440
Tssr109801 11 85083478 to 85083484 6 - TSS region transcription start site region 109801
Tssr109802 11 85094122 to 85094126 4 - TSS region transcription start site region 109802
Gm11439 11 85095141 to 85095549 408 - pseudogene predicted gene 11439
Tssr103817 11 85111077 to 85111089 12 + TSS region transcription start site region 103817
Gm18157 11 85111088 to 85111829 741 + pseudogene predicted gene, 18157
Rpl13-ps1 11 85111126 to 85111793 667 - pseudogene ribosomal protein L13, pseudogene 1
Cpgi3450 11 85139359 to 85140611 1252 CpG island CpG island 3450
Tssr109803 11 85139899 to 85139922 23 - TSS region transcription start site region 109803
Tssr109804 11 85139939 to 85139971 32 - TSS region transcription start site region 109804
D11Mit159 11 85154238 to 85154359 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 159
Gm23506 11 85163077 to 85163183 106 + snRNA gene predicted gene, 23506
Cpgi3451 11 85170104 to 85170382 278 CpG island CpG island 3451
1700125H20Rik 11 85170404 to 85181145 10741 + protein coding gene RIKEN cDNA 1700125H20 gene
Tssr3620 11 85171068 to 85171073 5 + TSS region transcription start site region 3620
Tssr103818 11 85171074 to 85171086 12 + TSS region transcription start site region 103818
Tssr103819 11 85171097 to 85171104 7 + TSS region transcription start site region 103819
D11Mit178 11 85175558 to 85175703 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 178
Tssr3621 11 85177998 to 85178011 13 + TSS region transcription start site region 3621
Tssr103820 11 85178034 to 85178041 7 + TSS region transcription start site region 103820
Cpgi3452 11 85182952 to 85183418 466 CpG island CpG island 3452
Appbp2 11 85191308 to 85235120 43812 - protein coding gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2
Tssr103821 11 85194333 to 85194352 19 + TSS region transcription start site region 103821
Tssr103822 11 85194357 to 85194370 13 + TSS region transcription start site region 103822
Gm38935 11 85204331 to 85231641 27310 + lncRNA gene predicted gene, 38935
Akirin1-ps 11 85216597 to 85217054 457 + pseudogene akirin 1, pseudogene
Cpgi3453 11 85234337 to 85235684 1347 CpG island CpG island 3453
Tssr109805 11 85234807 to 85234840 33 - TSS region transcription start site region 109805
Tssr109806 11 85234867 to 85234914 47 - TSS region transcription start site region 109806
Tssr109807 11 85235065 to 85235137 72 - TSS region transcription start site region 109807
Appbp2os 11 85235166 to 85238304 3138 + antisense lncRNA gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand
Gm22587 11 85297452 to 85297749 297 - unclassified non-coding RNA gene predicted gene, 22587
Cpgi3454 11 85310590 to 85312235 1645 CpG island CpG island 3454
Tssr109808 11 85311072 to 85311103 31 - TSS region transcription start site region 109808
Tssr103823 11 85311190 to 85311210 20 + TSS region transcription start site region 103823
Tssr103824 11 85311232 to 85311286 54 + TSS region transcription start site region 103824
Ppm1d 11 85311254 to 85347071 35817 + protein coding gene protein phosphatase 1D magnesium-dependent, delta isoform
Tssr103825 11 85311289 to 85311325 36 + TSS region transcription start site region 103825
Tssr103826 11 85311346 to 85311395 49 + TSS region transcription start site region 103826
Tssr103827 11 85311401 to 85311412 11 + TSS region transcription start site region 103827
Tssr109809 11 85312053 to 85312097 44 - TSS region transcription start site region 109809
Tssr103828 11 85312138 to 85312149 11 + TSS region transcription start site region 103828
Tssr103829 11 85312172 to 85312180 8 + TSS region transcription start site region 103829
Tssr103830 11 85339668 to 85339677 9 + TSS region transcription start site region 103830
Tssr103831 11 85339699 to 85339759 60 + TSS region transcription start site region 103831
Tssr103832 11 85341127 to 85341133 6 + TSS region transcription start site region 103832
Cpgi3455 11 85352600 to 85353452 852 CpG island CpG island 3455
Tssr109810 11 85352625 to 85352640 15 - TSS region transcription start site region 109810
Tssr103833 11 85352775 to 85352797 22 + TSS region transcription start site region 103833
Tssr103834 11 85353156 to 85353219 63 + TSS region transcription start site region 103834
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103835 11 85492720 to 85492732 12 + TSS region transcription start site region 103835
Tssr103836 11 85492737 to 85492751 14 + TSS region transcription start site region 103836
Gm23765 11 85493759 to 85493905 146 + snRNA gene predicted gene, 23765
Tssr109811 11 85524944 to 85524951 7 - TSS region transcription start site region 109811
Tssr109812 11 85546641 to 85546642 1 - TSS region transcription start site region 109812
Tssr103837 11 85549592 to 85549595 3 + TSS region transcription start site region 103837
D11Mit324 11 85583427 to 85583528 101 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 324
D11Mit220 11 85583428 to 85583540 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 220
D11Mit324.2 11 85583506 to 85583678 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 324.2
7030407E18Rik 11 85598479 to 85602216 3737 unclassified gene RIKEN cDNA 7030407E18 gene
Tssr103838 11 85614820 to 85614824 4 + TSS region transcription start site region 103838
Tssr103839 11 85683852 to 85683867 15 + TSS region transcription start site region 103839
Tssr103840 11 85688323 to 85688326 3 + TSS region transcription start site region 103840
Bcas3os1 11 85702200 to 85719744 17544 - antisense lncRNA gene breast carcinoma amplified sequence 3, opposite strand 1
Tssr103841 11 85713763 to 85713803 40 + TSS region transcription start site region 103841
Tssr109813 11 85719737 to 85719750 13 - TSS region transcription start site region 109813
Tssr103842 11 85739881 to 85739892 11 + TSS region transcription start site region 103842
Tssr103843 11 85739906 to 85739917 11 + TSS region transcription start site region 103843
Tssr103844 11 85739931 to 85739947 16 + TSS region transcription start site region 103844
Tssr103845 11 85739948 to 85739965 17 + TSS region transcription start site region 103845
Mir5110 11 85760616 to 85760702 86 - miRNA gene microRNA 5110
Bcas3os2 11 85766833 to 85775680 8847 - antisense lncRNA gene breast carcinoma amplified sequence 3 opposite strand 2