Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84803087-84983153

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Mrm1 11 84813061 to 84819515 6454 - protein coding gene mitochondrial rRNA methyltransferase 1
Cpgi3443 11 84818417 to 84819810 1393 CpG island CpG island 3443
Tssr103807 11 84818832 to 84818870 38 + TSS region transcription start site region 103807
Tssr109768 11 84819390 to 84819415 25 - TSS region transcription start site region 109768
Tssr109769 11 84819450 to 84819471 21 - TSS region transcription start site region 109769
Dhrs11 11 84820856 to 84828994 8138 - protein coding gene dehydrogenase/reductase (SDR family) member 11
Tssr109770 11 84823540 to 84823553 13 - TSS region transcription start site region 109770
Tssr109771 11 84823588 to 84823610 22 - TSS region transcription start site region 109771
Tssr109772 11 84823668 to 84823695 27 - TSS region transcription start site region 109772
Tssr109773 11 84823718 to 84823729 11 - TSS region transcription start site region 109773
Tssr109774 11 84825593 to 84825604 11 - TSS region transcription start site region 109774
Tssr109775 11 84826283 to 84826301 18 - TSS region transcription start site region 109775
Tssr109776 11 84827274 to 84827294 20 - TSS region transcription start site region 109776
Tssr109777 11 84827298 to 84827311 13 - TSS region transcription start site region 109777
Tssr109778 11 84827361 to 84827374 13 - TSS region transcription start site region 109778
Tssr109779 11 84827646 to 84827656 10 - TSS region transcription start site region 109779
Cpgi3444 11 84828539 to 84829598 1059 CpG island CpG island 3444
Tssr109780 11 84828935 to 84828944 9 - TSS region transcription start site region 109780
Tssr109781 11 84828953 to 84828966 13 - TSS region transcription start site region 109781
Tssr109782 11 84828981 to 84829023 42 - TSS region transcription start site region 109782
Tssr109783 11 84829123 to 84829132 9 - TSS region transcription start site region 109783
4930502E09Rik 11 84829178 to 84830868 1690 + lncRNA gene RIKEN cDNA 4930502E09 gene
Ggnbp2 11 84832361 to 84870779 38418 - protein coding gene gametogenetin binding protein 2
Tssr109784 11 84840301 to 84840330 29 - TSS region transcription start site region 109784
Tssr109785 11 84840365 to 84840377 12 - TSS region transcription start site region 109785
D11Mit195 11 84840498 to 84840636 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 195
Tssr109786 11 84846300 to 84846331 31 - TSS region transcription start site region 109786
Tssr109787 11 84846481 to 84846502 21 - TSS region transcription start site region 109787
D11Ertd437e 11 84851106 to 84851316 210 DNA segment DNA segment, Chr 11, ERATO Doi 437, expressed
Tssr109788 11 84860601 to 84860630 29 - TSS region transcription start site region 109788
Cpgi3445 11 84869524 to 84871274 1750 CpG island CpG island 3445
Ggnbp2os 11 84870005 to 84871631 1626 + lncRNA gene gametogenetin binding protein 2, opposite strand
Tssr109789 11 84870031 to 84870107 76 - TSS region transcription start site region 109789
Tssr109790 11 84870128 to 84870182 54 - TSS region transcription start site region 109790
Tssr109791 11 84870188 to 84870230 42 - TSS region transcription start site region 109791
Tssr109792 11 84870696 to 84870711 15 - TSS region transcription start site region 109792
Tssr109793 11 84870712 to 84870807 95 - TSS region transcription start site region 109793
Tssr109794 11 84870812 to 84870823 11 - TSS region transcription start site region 109794
Tssr103808 11 84870861 to 84870921 60 + TSS region transcription start site region 103808
Tssr109795 11 84871734 to 84871738 4 - TSS region transcription start site region 109795
Pigw 11 84876315 to 84880285 3970 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class W
Cpgi3446 11 84879650 to 84880924 1274 CpG island CpG island 3446
Tssr103809 11 84879880 to 84879922 42 + TSS region transcription start site region 103809
Myo19 11 84880192 to 84911131 30939 + protein coding gene myosin XIX
Tssr109796 11 84880249 to 84880299 50 - TSS region transcription start site region 109796
Tssr103810 11 84880308 to 84880373 65 + TSS region transcription start site region 103810
Tssr103811 11 84880376 to 84880391 15 + TSS region transcription start site region 103811
Gm23564 11 84893087 to 84893153 66 + miRNA gene predicted gene, 23564
Tssr103812 11 84901129 to 84901146 17 + TSS region transcription start site region 103812
Znhit3 11 84910950 to 84916356 5406 - protein coding gene zinc finger, HIT type 3
Cpgi3447 11 84915985 to 84916485 500 CpG island CpG island 3447
Tssr109797 11 84916234 to 84916260 26 - TSS region transcription start site region 109797
Tssr109798 11 84916338 to 84916371 33 - TSS region transcription start site region 109798
D11Mit221 11 84929345 to 84929451 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 221
Gm33028 11 84940261 to 84943855 3594 + lncRNA gene predicted gene, 33028
Gm32917 11 84943891 to 84951103 7212 - lncRNA gene predicted gene, 32917
Cpgi3448 11 84943960 to 84944153 193 CpG island CpG island 3448
Tssr109799 11 84944789 to 84944800 11 - TSS region transcription start site region 109799
Tssr103813 11 84944914 to 84944921 7 + TSS region transcription start site region 103813
Cpgi3449 11 84957521 to 84958385 864 CpG island CpG island 3449
Tssr103814 11 84957775 to 84957799 24 + TSS region transcription start site region 103814
Car4 11 84957786 to 84966044 8258 + protein coding gene carbonic anhydrase 4
Tssr103815 11 84957802 to 84957813 11 + TSS region transcription start site region 103815
Tssr103816 11 84957817 to 84957835 18 + TSS region transcription start site region 103816
D11Mit121 11 84970026 to 84970145 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 121