Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84400514-84650542

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor
Tssr109756 11 84442644 to 84442668 24 - TSS region transcription start site region 109756
Tssr109757 11 84442680 to 84442703 23 - TSS region transcription start site region 109757
Tssr109758 11 84443061 to 84443071 10 - TSS region transcription start site region 109758
Tssr109759 11 84491520 to 84491526 6 - TSS region transcription start site region 109759
Tssr109760 11 84491529 to 84491534 5 - TSS region transcription start site region 109760
Tssr109761 11 84491567 to 84491578 11 - TSS region transcription start site region 109761
Cpgi3431 11 84513086 to 84514030 944 CpG island CpG island 3431
Tssr109762 11 84513391 to 84513402 11 - TSS region transcription start site region 109762
Tssr109763 11 84513485 to 84513553 68 - TSS region transcription start site region 109763
Tssr109764 11 84519047 to 84519059 12 - TSS region transcription start site region 109764
Tssr109765 11 84519273 to 84519286 13 - TSS region transcription start site region 109765
Lhx1 11 84519379 to 84525534 6155 - protein coding gene LIM homeobox protein 1
Cpgi3432 11 84519515 to 84520544 1029 CpG island CpG island 3432
Cpgi3433 11 84522046 to 84522289 243 CpG island CpG island 3433
Cpgi3434 11 84522615 to 84523041 426 CpG island CpG island 3434
Cpgi3435 11 84523984 to 84526601 2617 CpG island CpG island 3435
Tssr109766 11 84524855 to 84524870 15 - TSS region transcription start site region 109766
Tssr109767 11 84525514 to 84525542 28 - TSS region transcription start site region 109767
Tssr103805 11 84525647 to 84525658 11 + TSS region transcription start site region 103805
Lhx1os 11 84525660 to 84535831 10171 + lincRNA gene LIM homeobox 1, opposite strand
Tssr103806 11 84525672 to 84525689 17 + TSS region transcription start site region 103806
Cpgi3436 11 84529236 to 84529563 327 CpG island CpG island 3436
Cpgi3437 11 84570481 to 84570640 159 CpG island CpG island 3437
D11Mit281 11 84624549 to 84624670 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 281
Cpgi3438 11 84642205 to 84643207 1002 CpG island CpG island 3438