Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:8439618-9639625

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tns3 11 8431652 to 8664535 232883 - protein coding gene tensin 3
Tssr106785 11 8445095 to 8445102 7 - TSS region transcription start site region 106785
Tssr106786 11 8446133 to 8446154 21 - TSS region transcription start site region 106786
Tssr106787 11 8446233 to 8446236 3 - TSS region transcription start site region 106787
Tssr106788 11 8446286 to 8446291 5 - TSS region transcription start site region 106788
Tssr106789 11 8455269 to 8455291 22 - TSS region transcription start site region 106789
Tssr106790 11 8468450 to 8468459 9 - TSS region transcription start site region 106790
Tssr106791 11 8468467 to 8468477 10 - TSS region transcription start site region 106791
Tssr106792 11 8468488 to 8468511 23 - TSS region transcription start site region 106792
Cpgi2573 11 8468515 to 8469034 519 CpG island CpG island 2573
Tssr106793 11 8468516 to 8468545 29 - TSS region transcription start site region 106793
Tssr106794 11 8468555 to 8468560 5 - TSS region transcription start site region 106794
Tssr106795 11 8468571 to 8468580 9 - TSS region transcription start site region 106795
Tssr106796 11 8468648 to 8468706 58 - TSS region transcription start site region 106796
Tssr106797 11 8468707 to 8468757 50 - TSS region transcription start site region 106797
Tssr106798 11 8468817 to 8468822 5 - TSS region transcription start site region 106798
Tssr106799 11 8477141 to 8477152 11 - TSS region transcription start site region 106799
Tssr106800 11 8479925 to 8479931 6 - TSS region transcription start site region 106800
Tssr106801 11 8492406 to 8492411 5 - TSS region transcription start site region 106801
D11Dcr4 11 8495930 to 8496025 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 4
Tssr106802 11 8503783 to 8503794 11 - TSS region transcription start site region 106802
Tssr106803 11 8503796 to 8503803 7 - TSS region transcription start site region 106803
Tssr106804 11 8503886 to 8503910 24 - TSS region transcription start site region 106804
Tssr106805 11 8505035 to 8505045 10 - TSS region transcription start site region 106805
Tssr106806 11 8514464 to 8514467 3 - TSS region transcription start site region 106806
Tssr106807 11 8531733 to 8531767 34 - TSS region transcription start site region 106807
Tssr100305 11 8545340 to 8545342 2 + TSS region transcription start site region 100305
Tssr106808 11 8549219 to 8549244 25 - TSS region transcription start site region 106808
Tssr106809 11 8558399 to 8558410 11 - TSS region transcription start site region 106809
Tssr106810 11 8558974 to 8558985 11 - TSS region transcription start site region 106810
Tssr100306 11 8569849 to 8569858 9 + TSS region transcription start site region 100306
Tssr106811 11 8573446 to 8573452 6 - TSS region transcription start site region 106811
Tssr106812 11 8575315 to 8575363 48 - TSS region transcription start site region 106812
Tssr106813 11 8575589 to 8575592 3 - TSS region transcription start site region 106813
Tssr106814 11 8575613 to 8575633 20 - TSS region transcription start site region 106814
Tssr106815 11 8575655 to 8575666 11 - TSS region transcription start site region 106815
Tssr106816 11 8577232 to 8577247 15 - TSS region transcription start site region 106816
Tssr106817 11 8579179 to 8579184 5 - TSS region transcription start site region 106817
Tssr106818 11 8579204 to 8579212 8 - TSS region transcription start site region 106818
Tssr106819 11 8579245 to 8579267 22 - TSS region transcription start site region 106819
Tssr106820 11 8579405 to 8579430 25 - TSS region transcription start site region 106820
Tssr106821 11 8579462 to 8579504 42 - TSS region transcription start site region 106821
Tssr106822 11 8579702 to 8579720 18 - TSS region transcription start site region 106822
Tssr106823 11 8579811 to 8579820 9 - TSS region transcription start site region 106823
Tssr106824 11 8579850 to 8579858 8 - TSS region transcription start site region 106824
Tssr106825 11 8579959 to 8579965 6 - TSS region transcription start site region 106825
Tssr106826 11 8587258 to 8587306 48 - TSS region transcription start site region 106826
Tssr106827 11 8589438 to 8589441 3 - TSS region transcription start site region 106827
Tssr100307 11 8589807 to 8589822 15 + TSS region transcription start site region 100307
Tssr100308 11 8594835 to 8594852 17 + TSS region transcription start site region 100308
Tssr106828 11 8600718 to 8600747 29 - TSS region transcription start site region 106828
Tssr106829 11 8600756 to 8600766 10 - TSS region transcription start site region 106829
Tssr106830 11 8600782 to 8600803 21 - TSS region transcription start site region 106830
Tssr106831 11 8601131 to 8601144 13 - TSS region transcription start site region 106831
Tssr100309 11 8605082 to 8605093 11 + TSS region transcription start site region 100309
Tssr106832 11 8605213 to 8605232 19 - TSS region transcription start site region 106832
Tssr106833 11 8605239 to 8605257 18 - TSS region transcription start site region 106833
Tssr106834 11 8605291 to 8605302 11 - TSS region transcription start site region 106834
Tssr106835 11 8612229 to 8612236 7 - TSS region transcription start site region 106835
Tssr106836 11 8622552 to 8622585 33 - TSS region transcription start site region 106836
Cpgi2574 11 8623932 to 8624930 998 CpG island CpG island 2574
Tssr106837 11 8624173 to 8624219 46 - TSS region transcription start site region 106837
Tssr106838 11 8624600 to 8624615 15 - TSS region transcription start site region 106838
Tssr106839 11 8624620 to 8624657 37 - TSS region transcription start site region 106839
Tssr106840 11 8624674 to 8624695 21 - TSS region transcription start site region 106840
Tssr106841 11 8624723 to 8624774 51 - TSS region transcription start site region 106841
Tssr106842 11 8624900 to 8624918 18 - TSS region transcription start site region 106842
Tssr106843 11 8635906 to 8635914 8 - TSS region transcription start site region 106843
D11Mit129 11 8644794 to 8644931 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 129
Tssr106844 11 8653184 to 8653188 4 - TSS region transcription start site region 106844
Tssr100310 11 8655619 to 8655656 37 + TSS region transcription start site region 100310
Cpgi2575 11 8663672 to 8664876 1204 CpG island CpG island 2575
Tssr106845 11 8664043 to 8664064 21 - TSS region transcription start site region 106845
Tssr106846 11 8664067 to 8664114 47 - TSS region transcription start site region 106846
Tssr106847 11 8664499 to 8664551 52 - TSS region transcription start site region 106847
Tssr106848 11 8664553 to 8664594 41 - TSS region transcription start site region 106848
Tssr106849 11 8664667 to 8664681 14 - TSS region transcription start site region 106849
Tssr100311 11 8708931 to 8708939 8 + TSS region transcription start site region 100311
Tssr100312 11 8722633 to 8722677 44 + TSS region transcription start site region 100312
Tssr100313 11 8773623 to 8773635 12 + TSS region transcription start site region 100313
Tssr100314 11 8773637 to 8773646 9 + TSS region transcription start site region 100314
Gm36772 11 8796577 to 8799607 3030 - lncRNA gene predicted gene, 36772
Gm11990 11 8805955 to 8806725 770 - pseudogene predicted gene 11990
Pkd1l1 11 8826708 to 8973266 146558 - protein coding gene polycystic kidney disease 1 like 1
Gm40815 11 8884173 to 8885303 1130 + pseudogene predicted gene, 40815
Gm11991 11 8884223 to 8885296 1073 - pseudogene predicted gene 11991
Tssr106850 11 8903717 to 8903727 10 - TSS region transcription start site region 106850
D11Mit226 11 8904955 to 8905093 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 226
Gm40814 11 8921301 to 8927994 6693 + protein coding gene predicted gene, 40814
Gm46271 11 8924024 to 8925221 1197 + lncRNA gene predicted gene, 46271
Hus1 11 8993137 to 9011191 18054 - protein coding gene HUS1 checkpoint clamp component
Tssr100315 11 9010675 to 9010709 34 + TSS region transcription start site region 100315
Cpgi2576 11 9010829 to 9011330 501 CpG island CpG island 2576
Tssr106851 11 9011111 to 9011164 53 - TSS region transcription start site region 106851
Sun3 11 9016054 to 9048991 32937 - protein coding gene Sad1 and UNC84 domain containing 3
Tshp9 11 9026225 to 9026374 149 QTL tooth shape 9
Skull15 11 9026225 to 9026374 149 QTL skull morphology 15
Lmr6 11 9026225 to 9026374 149 QTL leishmaniasis resistance 6
D11Mit62 11 9026225 to 9026374 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 62
Tssr106852 11 9039579 to 9039584 5 - TSS region transcription start site region 106852
Tssr106853 11 9039585 to 9039601 16 - TSS region transcription start site region 106853
Tssr106854 11 9039618 to 9039625 7 - TSS region transcription start site region 106854
Cpgi2577 11 9048390 to 9049190 800 CpG island CpG island 2577
Tssr106855 11 9048473 to 9048489 16 - TSS region transcription start site region 106855
Tssr106856 11 9048493 to 9048511 18 - TSS region transcription start site region 106856
Tssr106857 11 9048514 to 9048521 7 - TSS region transcription start site region 106857
Tssr100316 11 9048575 to 9048630 55 + TSS region transcription start site region 100316
Gm11992 11 9048592 to 9069354 20762 + protein coding gene predicted gene 11992
Tssr100317 11 9048698 to 9048711 13 + TSS region transcription start site region 100317
Tssr100318 11 9048829 to 9048839 10 + TSS region transcription start site region 100318
Tssr3422 11 9049033 to 9049043 10 + TSS region transcription start site region 3422
Tssr100319 11 9049047 to 9049061 14 + TSS region transcription start site region 100319
Tssr100320 11 9049069 to 9049082 13 + TSS region transcription start site region 100320
Tssr100321 11 9049098 to 9049110 12 + TSS region transcription start site region 100321
Tssr100322 11 9117952 to 9117990 38 + TSS region transcription start site region 100322
Tssr100323 11 9117998 to 9118017 19 + TSS region transcription start site region 100323
Tssr100324 11 9118070 to 9118091 21 + TSS region transcription start site region 100324
Tssr3423 11 9118098 to 9118133 35 + TSS region transcription start site region 3423
Upp1 11 9118103 to 9136170 18067 + protein coding gene uridine phosphorylase 1
Tssr3424 11 9118134 to 9118141 7 + TSS region transcription start site region 3424
Cpgi2578 11 9118352 to 9119440 1088 CpG island CpG island 2578
Tssr100325 11 9118536 to 9118556 20 + TSS region transcription start site region 100325
Tssr100326 11 9118571 to 9118593 22 + TSS region transcription start site region 100326
Tssr100327 11 9118619 to 9118634 15 + TSS region transcription start site region 100327
Tssr100328 11 9119223 to 9119230 7 + TSS region transcription start site region 100328
Tssr100329 11 9119279 to 9119296 17 + TSS region transcription start site region 100329
Tssr100330 11 9120056 to 9120064 8 + TSS region transcription start site region 100330
Tssr100331 11 9125114 to 9125143 29 + TSS region transcription start site region 100331
Tssr100332 11 9125157 to 9125170 13 + TSS region transcription start site region 100332
Tssr100333 11 9131624 to 9131631 7 + TSS region transcription start site region 100333
Tssr100334 11 9139300 to 9139301 1 + TSS region transcription start site region 100334
Gm11993 11 9149778 to 9150597 819 - pseudogene predicted gene 11993
Cpgi2579 11 9150380 to 9150674 294 CpG island CpG island 2579
Tssr100335 11 9191769 to 9191779 10 + TSS region transcription start site region 100335
Tssr100336 11 9191790 to 9191799 9 + TSS region transcription start site region 100336
Tssr100337 11 9191934 to 9191948 14 + TSS region transcription start site region 100337
Abca13 11 9191942 to 9684259 492317 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 13
Tssr100338 11 9193415 to 9193428 13 + TSS region transcription start site region 100338
Tssr100339 11 9255627 to 9255628 1 + TSS region transcription start site region 100339
Tssr3425 11 9598077 to 9598078 1 + TSS region transcription start site region 3425