Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84167615-84878041

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Tssr103792 11 84173291 to 84173304 13 + TSS region transcription start site region 103792
Tssr103793 11 84173348 to 84173363 15 + TSS region transcription start site region 103793
Tssr103794 11 84173450 to 84173460 10 + TSS region transcription start site region 103794
Tssr103795 11 84173472 to 84173494 22 + TSS region transcription start site region 103795
Tssr103796 11 84173496 to 84173525 29 + TSS region transcription start site region 103796
Tssr103797 11 84177630 to 84177653 23 + TSS region transcription start site region 103797
Cpgi3430 11 84179174 to 84180508 1334 CpG island CpG island 3430
Tssr103798 11 84179611 to 84179657 46 + TSS region transcription start site region 103798
Tssr103799 11 84179658 to 84179687 29 + TSS region transcription start site region 103799
Tssr103800 11 84179792 to 84179849 57 + TSS region transcription start site region 103800
Tssr103801 11 84179852 to 84179863 11 + TSS region transcription start site region 103801
Tssr103802 11 84179866 to 84179877 11 + TSS region transcription start site region 103802
Tssr103803 11 84180309 to 84180360 51 + TSS region transcription start site region 103803
Gm37391 11 84189593 to 84191910 2317 + unclassified gene predicted gene, 37391
Gm31074 11 84204039 to 84208269 4230 - pseudogene predicted gene, 31074
D11Dcr35 11 84233331 to 84233426 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 35
Tssr103804 11 84249398 to 84249412 14 + TSS region transcription start site region 103804
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor
Tssr109756 11 84442644 to 84442668 24 - TSS region transcription start site region 109756
Tssr109757 11 84442680 to 84442703 23 - TSS region transcription start site region 109757
Tssr109758 11 84443061 to 84443071 10 - TSS region transcription start site region 109758
Tssr109759 11 84491520 to 84491526 6 - TSS region transcription start site region 109759
Tssr109760 11 84491529 to 84491534 5 - TSS region transcription start site region 109760
Tssr109761 11 84491567 to 84491578 11 - TSS region transcription start site region 109761
Cpgi3431 11 84513086 to 84514030 944 CpG island CpG island 3431
Tssr109762 11 84513391 to 84513402 11 - TSS region transcription start site region 109762
Tssr109763 11 84513485 to 84513553 68 - TSS region transcription start site region 109763
Tssr109764 11 84519047 to 84519059 12 - TSS region transcription start site region 109764
Tssr109765 11 84519273 to 84519286 13 - TSS region transcription start site region 109765
Lhx1 11 84519379 to 84525534 6155 - protein coding gene LIM homeobox protein 1
Cpgi3432 11 84519515 to 84520544 1029 CpG island CpG island 3432
Cpgi3433 11 84522046 to 84522289 243 CpG island CpG island 3433
Cpgi3434 11 84522615 to 84523041 426 CpG island CpG island 3434
Cpgi3435 11 84523984 to 84526601 2617 CpG island CpG island 3435
Tssr109766 11 84524855 to 84524870 15 - TSS region transcription start site region 109766
Tssr109767 11 84525514 to 84525542 28 - TSS region transcription start site region 109767
Tssr103805 11 84525647 to 84525658 11 + TSS region transcription start site region 103805
Lhx1os 11 84525660 to 84535831 10171 + lincRNA gene LIM homeobox 1, opposite strand
Tssr103806 11 84525672 to 84525689 17 + TSS region transcription start site region 103806
Cpgi3436 11 84529236 to 84529563 327 CpG island CpG island 3436
Cpgi3437 11 84570481 to 84570640 159 CpG island CpG island 3437
D11Mit281 11 84624549 to 84624670 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 281
Cpgi3438 11 84642205 to 84643207 1002 CpG island CpG island 3438
D11Mit355 11 84692330 to 84692454 124 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 355
1700109G15Rik 11 84716976 to 84720432 3456 - lincRNA gene RIKEN cDNA 1700109G15 gene
Cpgi3439 11 84724122 to 84724430 308 CpG island CpG island 3439
Cpgi3440 11 84760906 to 84761079 173 CpG island CpG island 3440
Gm11431 11 84763855 to 84777829 13974 - lincRNA gene predicted gene 11431
Cpgi3441 11 84764584 to 84764855 271 CpG island CpG island 3441
Cpgi3442 11 84798108 to 84798308 200 CpG island CpG island 3442
Mrm1 11 84813061 to 84819515 6454 - protein coding gene mitochondrial rRNA methyltransferase 1
Cpgi3443 11 84818417 to 84819810 1393 CpG island CpG island 3443
Tssr103807 11 84818832 to 84818870 38 + TSS region transcription start site region 103807
Tssr109768 11 84819390 to 84819415 25 - TSS region transcription start site region 109768
Tssr109769 11 84819450 to 84819471 21 - TSS region transcription start site region 109769
Dhrs11 11 84820856 to 84828994 8138 - protein coding gene dehydrogenase/reductase (SDR family) member 11
Tssr109770 11 84823540 to 84823553 13 - TSS region transcription start site region 109770
Tssr109771 11 84823588 to 84823610 22 - TSS region transcription start site region 109771
Tssr109772 11 84823668 to 84823695 27 - TSS region transcription start site region 109772
Tssr109773 11 84823718 to 84823729 11 - TSS region transcription start site region 109773
Tssr109774 11 84825593 to 84825604 11 - TSS region transcription start site region 109774
Tssr109775 11 84826283 to 84826301 18 - TSS region transcription start site region 109775
Tssr109776 11 84827274 to 84827294 20 - TSS region transcription start site region 109776
Tssr109777 11 84827298 to 84827311 13 - TSS region transcription start site region 109777
Tssr109778 11 84827361 to 84827374 13 - TSS region transcription start site region 109778
Tssr109779 11 84827646 to 84827656 10 - TSS region transcription start site region 109779
Cpgi3444 11 84828539 to 84829598 1059 CpG island CpG island 3444
Tssr109780 11 84828935 to 84828944 9 - TSS region transcription start site region 109780
Tssr109781 11 84828953 to 84828966 13 - TSS region transcription start site region 109781
Tssr109782 11 84828981 to 84829023 42 - TSS region transcription start site region 109782
Tssr109783 11 84829123 to 84829132 9 - TSS region transcription start site region 109783
4930502E09Rik 11 84829178 to 84830868 1690 + lncRNA gene RIKEN cDNA 4930502E09 gene
Ggnbp2 11 84832361 to 84870779 38418 - protein coding gene gametogenetin binding protein 2
Tssr109784 11 84840301 to 84840330 29 - TSS region transcription start site region 109784
Tssr109785 11 84840365 to 84840377 12 - TSS region transcription start site region 109785
D11Mit195 11 84840498 to 84840636 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 195
Tssr109786 11 84846300 to 84846331 31 - TSS region transcription start site region 109786
Tssr109787 11 84846481 to 84846502 21 - TSS region transcription start site region 109787
D11Ertd437e 11 84851106 to 84851316 210 DNA segment DNA segment, Chr 11, ERATO Doi 437, expressed
Tssr109788 11 84860601 to 84860630 29 - TSS region transcription start site region 109788
Cpgi3445 11 84869524 to 84871274 1750 CpG island CpG island 3445
Ggnbp2os 11 84870005 to 84871631 1626 + lncRNA gene gametogenetin binding protein 2, opposite strand
Tssr109789 11 84870031 to 84870107 76 - TSS region transcription start site region 109789
Tssr109790 11 84870128 to 84870182 54 - TSS region transcription start site region 109790
Tssr109791 11 84870188 to 84870230 42 - TSS region transcription start site region 109791
Tssr109792 11 84870696 to 84870711 15 - TSS region transcription start site region 109792
Tssr109793 11 84870712 to 84870807 95 - TSS region transcription start site region 109793
Tssr109794 11 84870812 to 84870823 11 - TSS region transcription start site region 109794
Tssr103808 11 84870861 to 84870921 60 + TSS region transcription start site region 103808
Tssr109795 11 84871734 to 84871738 4 - TSS region transcription start site region 109795
Pigw 11 84876315 to 84880285 3970 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class W