Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83979672-84551651

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Synrg 11 83964428 to 84044578 80150 + protein coding gene synergin, gamma
Tssr103786 11 84033032 to 84033038 6 + TSS region transcription start site region 103786
Dusp14 11 84048041 to 84069256 21215 - protein coding gene dual specificity phosphatase 14
Tssr109739 11 84067063 to 84067095 32 - TSS region transcription start site region 109739
Tssr109740 11 84067757 to 84067770 13 - TSS region transcription start site region 109740
Tssr109741 11 84067776 to 84067786 10 - TSS region transcription start site region 109741
Cpgi3428 11 84067864 to 84068862 998 CpG island CpG island 3428
Tssr109742 11 84068325 to 84068345 20 - TSS region transcription start site region 109742
Tssr109743 11 84068359 to 84068367 8 - TSS region transcription start site region 109743
Tssr109744 11 84068375 to 84068386 11 - TSS region transcription start site region 109744
Tssr109745 11 84068554 to 84068604 50 - TSS region transcription start site region 109745
Tssr109746 11 84068766 to 84068777 11 - TSS region transcription start site region 109746
Tssr3618 11 84068786 to 84068797 11 - TSS region transcription start site region 3618
Tssr109747 11 84069124 to 84069135 11 - TSS region transcription start site region 109747
Tssr109748 11 84069179 to 84069205 26 - TSS region transcription start site region 109748
Tada2a 11 84078920 to 84129600 50680 - protein coding gene transcriptional adaptor 2A
Tssr109749 11 84083620 to 84083624 4 - TSS region transcription start site region 109749
Tssr103787 11 84092783 to 84092787 4 + TSS region transcription start site region 103787
Tssr109750 11 84101978 to 84101982 4 - TSS region transcription start site region 109750
Cpgi3429 11 84129060 to 84130096 1036 CpG island CpG island 3429
Tssr109751 11 84129558 to 84129580 22 - TSS region transcription start site region 109751
Tssr109752 11 84129582 to 84129620 38 - TSS region transcription start site region 109752
Tssr109753 11 84129623 to 84129634 11 - TSS region transcription start site region 109753
Tssr103788 11 84129649 to 84129705 56 + TSS region transcription start site region 103788
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Tssr103789 11 84129725 to 84129732 7 + TSS region transcription start site region 103789
Tssr103790 11 84129737 to 84129755 18 + TSS region transcription start site region 103790
Tssr103791 11 84129757 to 84129784 27 + TSS region transcription start site region 103791
Gm11437 11 84148361 to 84167476 19115 - protein coding gene predicted gene 11437
Tssr3619 11 84160921 to 84160923 2 + TSS region transcription start site region 3619
Tssr109754 11 84164476 to 84164493 17 - TSS region transcription start site region 109754
Tssr109755 11 84167466 to 84167508 42 - TSS region transcription start site region 109755
Tssr103792 11 84173291 to 84173304 13 + TSS region transcription start site region 103792
Tssr103793 11 84173348 to 84173363 15 + TSS region transcription start site region 103793
Tssr103794 11 84173450 to 84173460 10 + TSS region transcription start site region 103794
Tssr103795 11 84173472 to 84173494 22 + TSS region transcription start site region 103795
Tssr103796 11 84173496 to 84173525 29 + TSS region transcription start site region 103796
Tssr103797 11 84177630 to 84177653 23 + TSS region transcription start site region 103797
Cpgi3430 11 84179174 to 84180508 1334 CpG island CpG island 3430
Tssr103798 11 84179611 to 84179657 46 + TSS region transcription start site region 103798
Tssr103799 11 84179658 to 84179687 29 + TSS region transcription start site region 103799
Tssr103800 11 84179792 to 84179849 57 + TSS region transcription start site region 103800
Tssr103801 11 84179852 to 84179863 11 + TSS region transcription start site region 103801
Tssr103802 11 84179866 to 84179877 11 + TSS region transcription start site region 103802
Tssr103803 11 84180309 to 84180360 51 + TSS region transcription start site region 103803
Gm37391 11 84189593 to 84191910 2317 + unclassified gene predicted gene, 37391
Gm31074 11 84204039 to 84208269 4230 - pseudogene predicted gene, 31074
D11Dcr35 11 84233331 to 84233426 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 35
Tssr103804 11 84249398 to 84249412 14 + TSS region transcription start site region 103804
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor
Tssr109756 11 84442644 to 84442668 24 - TSS region transcription start site region 109756
Tssr109757 11 84442680 to 84442703 23 - TSS region transcription start site region 109757
Tssr109758 11 84443061 to 84443071 10 - TSS region transcription start site region 109758
Tssr109759 11 84491520 to 84491526 6 - TSS region transcription start site region 109759
Tssr109760 11 84491529 to 84491534 5 - TSS region transcription start site region 109760
Tssr109761 11 84491567 to 84491578 11 - TSS region transcription start site region 109761
Cpgi3431 11 84513086 to 84514030 944 CpG island CpG island 3431
Tssr109762 11 84513391 to 84513402 11 - TSS region transcription start site region 109762
Tssr109763 11 84513485 to 84513553 68 - TSS region transcription start site region 109763
Tssr109764 11 84519047 to 84519059 12 - TSS region transcription start site region 109764
Tssr109765 11 84519273 to 84519286 13 - TSS region transcription start site region 109765
Lhx1 11 84519379 to 84525534 6155 - protein coding gene LIM homeobox protein 1
Cpgi3432 11 84519515 to 84520544 1029 CpG island CpG island 3432
Cpgi3433 11 84522046 to 84522289 243 CpG island CpG island 3433
Cpgi3434 11 84522615 to 84523041 426 CpG island CpG island 3434
Cpgi3435 11 84523984 to 84526601 2617 CpG island CpG island 3435
Tssr109766 11 84524855 to 84524870 15 - TSS region transcription start site region 109766
Tssr109767 11 84525514 to 84525542 28 - TSS region transcription start site region 109767
Tssr103805 11 84525647 to 84525658 11 + TSS region transcription start site region 103805
Lhx1os 11 84525660 to 84535831 10171 + lincRNA gene LIM homeobox 1, opposite strand
Tssr103806 11 84525672 to 84525689 17 + TSS region transcription start site region 103806
Cpgi3436 11 84529236 to 84529563 327 CpG island CpG island 3436