Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83782152-84102179

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Lgth6 11 83842594 to 83842826 232 QTL body length 6
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211
Cpgi3420 11 83849406 to 83849781 375 CpG island CpG island 3420
Tssr109735 11 83849665 to 83849677 12 - TSS region transcription start site region 109735
Cpgi3421 11 83849973 to 83850368 395 CpG island CpG island 3421
Hnf1b 11 83850209 to 83905917 55708 + protein coding gene HNF1 homeobox B
Tssr109736 11 83850532 to 83850547 15 - TSS region transcription start site region 109736
Tssr109737 11 83850717 to 83850760 43 - TSS region transcription start site region 109737
Tssr109738 11 83850762 to 83850773 11 - TSS region transcription start site region 109738
Tssr103762 11 83850832 to 83850851 19 + TSS region transcription start site region 103762
Tssr103763 11 83850863 to 83850881 18 + TSS region transcription start site region 103763
Tssr3616 11 83850883 to 83850886 3 + TSS region transcription start site region 3616
Cpgi3422 11 83851073 to 83851534 461 CpG island CpG island 3422
Cpgi3423 11 83851951 to 83852361 410 CpG island CpG island 3423
Tssr103764 11 83852135 to 83852169 34 + TSS region transcription start site region 103764
Cpgi3424 11 83852688 to 83853688 1000 CpG island CpG island 3424
Tssr103765 11 83852920 to 83852944 24 + TSS region transcription start site region 103765
Tssr103766 11 83853816 to 83853826 10 + TSS region transcription start site region 103766
Tssr103767 11 83859321 to 83859328 7 + TSS region transcription start site region 103767
Tssr103768 11 83860613 to 83860631 18 + TSS region transcription start site region 103768
Tssr103769 11 83862809 to 83862820 11 + TSS region transcription start site region 103769
Tssr103770 11 83862874 to 83862885 11 + TSS region transcription start site region 103770
Cpgi3425 11 83863974 to 83864391 417 CpG island CpG island 3425
Tssr103771 11 83865621 to 83865631 10 + TSS region transcription start site region 103771
Tssr103772 11 83875528 to 83875555 27 + TSS region transcription start site region 103772
Tssr103773 11 83882700 to 83882728 28 + TSS region transcription start site region 103773
Tssr103774 11 83882730 to 83882760 30 + TSS region transcription start site region 103774
Tssr103775 11 83885494 to 83885504 10 + TSS region transcription start site region 103775
Tssr103776 11 83885675 to 83885706 31 + TSS region transcription start site region 103776
Tssr3617 11 83885775 to 83885811 36 + TSS region transcription start site region 3617
Tssr103777 11 83885869 to 83885879 10 + TSS region transcription start site region 103777
Tssr103778 11 83886092 to 83886102 10 + TSS region transcription start site region 103778
Cpgi3426 11 83941923 to 83942437 514 CpG island CpG island 3426
Tssr103779 11 83942084 to 83942105 21 + TSS region transcription start site region 103779
Ddx52 11 83942090 to 83963088 20998 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
Tssr103780 11 83942111 to 83942132 21 + TSS region transcription start site region 103780
Tssr103781 11 83942152 to 83942179 27 + TSS region transcription start site region 103781
Tssr103782 11 83942215 to 83942218 3 + TSS region transcription start site region 103782
Tssr103783 11 83955980 to 83956007 27 + TSS region transcription start site region 103783
D11Bhm146 11 83960499 to 83960617 118 DNA segment DNA segment, Chr 11, Boehm 146
Cpgi3427 11 83964182 to 83964861 679 CpG island CpG island 3427
Tssr103784 11 83964369 to 83964390 21 + TSS region transcription start site region 103784
Tssr103785 11 83964419 to 83964478 59 + TSS region transcription start site region 103785
Synrg 11 83964428 to 84044578 80150 + protein coding gene synergin, gamma
Tssr103786 11 84033032 to 84033038 6 + TSS region transcription start site region 103786
Dusp14 11 84048041 to 84069256 21215 - protein coding gene dual specificity phosphatase 14
Tssr109739 11 84067063 to 84067095 32 - TSS region transcription start site region 109739
Tssr109740 11 84067757 to 84067770 13 - TSS region transcription start site region 109740
Tssr109741 11 84067776 to 84067786 10 - TSS region transcription start site region 109741
Cpgi3428 11 84067864 to 84068862 998 CpG island CpG island 3428
Tssr109742 11 84068325 to 84068345 20 - TSS region transcription start site region 109742
Tssr109743 11 84068359 to 84068367 8 - TSS region transcription start site region 109743
Tssr109744 11 84068375 to 84068386 11 - TSS region transcription start site region 109744
Tssr109745 11 84068554 to 84068604 50 - TSS region transcription start site region 109745
Tssr109746 11 84068766 to 84068777 11 - TSS region transcription start site region 109746
Tssr3618 11 84068786 to 84068797 11 - TSS region transcription start site region 3618
Tssr109747 11 84069124 to 84069135 11 - TSS region transcription start site region 109747
Tssr109748 11 84069179 to 84069205 26 - TSS region transcription start site region 109748
Tada2a 11 84078920 to 84129600 50680 - protein coding gene transcriptional adaptor 2A
Tssr109749 11 84083620 to 84083624 4 - TSS region transcription start site region 109749
Tssr103787 11 84092783 to 84092787 4 + TSS region transcription start site region 103787
Tssr109750 11 84101978 to 84101982 4 - TSS region transcription start site region 109750