Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83780309-84580360

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
Lgth6 11 83842594 to 83842826 232 QTL body length 6
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211
Cpgi3420 11 83849406 to 83849781 375 CpG island CpG island 3420
Tssr109735 11 83849665 to 83849677 12 - TSS region transcription start site region 109735
Cpgi3421 11 83849973 to 83850368 395 CpG island CpG island 3421
Hnf1b 11 83850209 to 83905917 55708 + protein coding gene HNF1 homeobox B
Tssr109736 11 83850532 to 83850547 15 - TSS region transcription start site region 109736
Tssr109737 11 83850717 to 83850760 43 - TSS region transcription start site region 109737
Tssr109738 11 83850762 to 83850773 11 - TSS region transcription start site region 109738
Tssr103762 11 83850832 to 83850851 19 + TSS region transcription start site region 103762
Tssr103763 11 83850863 to 83850881 18 + TSS region transcription start site region 103763
Tssr3616 11 83850883 to 83850886 3 + TSS region transcription start site region 3616
Cpgi3422 11 83851073 to 83851534 461 CpG island CpG island 3422
Cpgi3423 11 83851951 to 83852361 410 CpG island CpG island 3423
Tssr103764 11 83852135 to 83852169 34 + TSS region transcription start site region 103764
Cpgi3424 11 83852688 to 83853688 1000 CpG island CpG island 3424
Tssr103765 11 83852920 to 83852944 24 + TSS region transcription start site region 103765
Tssr103766 11 83853816 to 83853826 10 + TSS region transcription start site region 103766
Tssr103767 11 83859321 to 83859328 7 + TSS region transcription start site region 103767
Tssr103768 11 83860613 to 83860631 18 + TSS region transcription start site region 103768
Tssr103769 11 83862809 to 83862820 11 + TSS region transcription start site region 103769
Tssr103770 11 83862874 to 83862885 11 + TSS region transcription start site region 103770
Cpgi3425 11 83863974 to 83864391 417 CpG island CpG island 3425
Tssr103771 11 83865621 to 83865631 10 + TSS region transcription start site region 103771
Tssr103772 11 83875528 to 83875555 27 + TSS region transcription start site region 103772
Tssr103773 11 83882700 to 83882728 28 + TSS region transcription start site region 103773
Tssr103774 11 83882730 to 83882760 30 + TSS region transcription start site region 103774
Tssr103775 11 83885494 to 83885504 10 + TSS region transcription start site region 103775
Tssr103776 11 83885675 to 83885706 31 + TSS region transcription start site region 103776
Tssr3617 11 83885775 to 83885811 36 + TSS region transcription start site region 3617
Tssr103777 11 83885869 to 83885879 10 + TSS region transcription start site region 103777
Tssr103778 11 83886092 to 83886102 10 + TSS region transcription start site region 103778
Cpgi3426 11 83941923 to 83942437 514 CpG island CpG island 3426
Tssr103779 11 83942084 to 83942105 21 + TSS region transcription start site region 103779
Ddx52 11 83942090 to 83963088 20998 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
Tssr103780 11 83942111 to 83942132 21 + TSS region transcription start site region 103780
Tssr103781 11 83942152 to 83942179 27 + TSS region transcription start site region 103781
Tssr103782 11 83942215 to 83942218 3 + TSS region transcription start site region 103782
Tssr103783 11 83955980 to 83956007 27 + TSS region transcription start site region 103783
D11Bhm146 11 83960499 to 83960617 118 DNA segment DNA segment, Chr 11, Boehm 146
Cpgi3427 11 83964182 to 83964861 679 CpG island CpG island 3427
Tssr103784 11 83964369 to 83964390 21 + TSS region transcription start site region 103784
Tssr103785 11 83964419 to 83964478 59 + TSS region transcription start site region 103785
Synrg 11 83964428 to 84044578 80150 + protein coding gene synergin, gamma
Tssr103786 11 84033032 to 84033038 6 + TSS region transcription start site region 103786
Dusp14 11 84048041 to 84069256 21215 - protein coding gene dual specificity phosphatase 14
Tssr109739 11 84067063 to 84067095 32 - TSS region transcription start site region 109739
Tssr109740 11 84067757 to 84067770 13 - TSS region transcription start site region 109740
Tssr109741 11 84067776 to 84067786 10 - TSS region transcription start site region 109741
Cpgi3428 11 84067864 to 84068862 998 CpG island CpG island 3428
Tssr109742 11 84068325 to 84068345 20 - TSS region transcription start site region 109742
Tssr109743 11 84068359 to 84068367 8 - TSS region transcription start site region 109743
Tssr109744 11 84068375 to 84068386 11 - TSS region transcription start site region 109744
Tssr109745 11 84068554 to 84068604 50 - TSS region transcription start site region 109745
Tssr109746 11 84068766 to 84068777 11 - TSS region transcription start site region 109746
Tssr3618 11 84068786 to 84068797 11 - TSS region transcription start site region 3618
Tssr109747 11 84069124 to 84069135 11 - TSS region transcription start site region 109747
Tssr109748 11 84069179 to 84069205 26 - TSS region transcription start site region 109748
Tada2a 11 84078920 to 84129600 50680 - protein coding gene transcriptional adaptor 2A
Tssr109749 11 84083620 to 84083624 4 - TSS region transcription start site region 109749
Tssr103787 11 84092783 to 84092787 4 + TSS region transcription start site region 103787
Tssr109750 11 84101978 to 84101982 4 - TSS region transcription start site region 109750
Cpgi3429 11 84129060 to 84130096 1036 CpG island CpG island 3429
Tssr109751 11 84129558 to 84129580 22 - TSS region transcription start site region 109751
Tssr109752 11 84129582 to 84129620 38 - TSS region transcription start site region 109752
Tssr109753 11 84129623 to 84129634 11 - TSS region transcription start site region 109753
Tssr103788 11 84129649 to 84129705 56 + TSS region transcription start site region 103788
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Tssr103789 11 84129725 to 84129732 7 + TSS region transcription start site region 103789
Tssr103790 11 84129737 to 84129755 18 + TSS region transcription start site region 103790
Tssr103791 11 84129757 to 84129784 27 + TSS region transcription start site region 103791
Gm11437 11 84148361 to 84167476 19115 - protein coding gene predicted gene 11437
Tssr3619 11 84160921 to 84160923 2 + TSS region transcription start site region 3619
Tssr109754 11 84164476 to 84164493 17 - TSS region transcription start site region 109754
Tssr109755 11 84167466 to 84167508 42 - TSS region transcription start site region 109755
Tssr103792 11 84173291 to 84173304 13 + TSS region transcription start site region 103792
Tssr103793 11 84173348 to 84173363 15 + TSS region transcription start site region 103793
Tssr103794 11 84173450 to 84173460 10 + TSS region transcription start site region 103794
Tssr103795 11 84173472 to 84173494 22 + TSS region transcription start site region 103795
Tssr103796 11 84173496 to 84173525 29 + TSS region transcription start site region 103796
Tssr103797 11 84177630 to 84177653 23 + TSS region transcription start site region 103797
Cpgi3430 11 84179174 to 84180508 1334 CpG island CpG island 3430
Tssr103798 11 84179611 to 84179657 46 + TSS region transcription start site region 103798
Tssr103799 11 84179658 to 84179687 29 + TSS region transcription start site region 103799
Tssr103800 11 84179792 to 84179849 57 + TSS region transcription start site region 103800
Tssr103801 11 84179852 to 84179863 11 + TSS region transcription start site region 103801
Tssr103802 11 84179866 to 84179877 11 + TSS region transcription start site region 103802
Tssr103803 11 84180309 to 84180360 51 + TSS region transcription start site region 103803
Gm37391 11 84189593 to 84191910 2317 + unclassified gene predicted gene, 37391
Gm31074 11 84204039 to 84208269 4230 - pseudogene predicted gene, 31074
D11Dcr35 11 84233331 to 84233426 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 35
Tssr103804 11 84249398 to 84249412 14 + TSS region transcription start site region 103804
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor
Tssr109756 11 84442644 to 84442668 24 - TSS region transcription start site region 109756
Tssr109757 11 84442680 to 84442703 23 - TSS region transcription start site region 109757
Tssr109758 11 84443061 to 84443071 10 - TSS region transcription start site region 109758
Tssr109759 11 84491520 to 84491526 6 - TSS region transcription start site region 109759
Tssr109760 11 84491529 to 84491534 5 - TSS region transcription start site region 109760
Tssr109761 11 84491567 to 84491578 11 - TSS region transcription start site region 109761
Cpgi3431 11 84513086 to 84514030 944 CpG island CpG island 3431
Tssr109762 11 84513391 to 84513402 11 - TSS region transcription start site region 109762
Tssr109763 11 84513485 to 84513553 68 - TSS region transcription start site region 109763
Tssr109764 11 84519047 to 84519059 12 - TSS region transcription start site region 109764
Tssr109765 11 84519273 to 84519286 13 - TSS region transcription start site region 109765
Lhx1 11 84519379 to 84525534 6155 - protein coding gene LIM homeobox protein 1
Cpgi3432 11 84519515 to 84520544 1029 CpG island CpG island 3432
Cpgi3433 11 84522046 to 84522289 243 CpG island CpG island 3433
Cpgi3434 11 84522615 to 84523041 426 CpG island CpG island 3434
Cpgi3435 11 84523984 to 84526601 2617 CpG island CpG island 3435
Tssr109766 11 84524855 to 84524870 15 - TSS region transcription start site region 109766
Tssr109767 11 84525514 to 84525542 28 - TSS region transcription start site region 109767
Tssr103805 11 84525647 to 84525658 11 + TSS region transcription start site region 103805
Lhx1os 11 84525660 to 84535831 10171 + lincRNA gene LIM homeobox 1, opposite strand
Tssr103806 11 84525672 to 84525689 17 + TSS region transcription start site region 103806
Cpgi3436 11 84529236 to 84529563 327 CpG island CpG island 3436
Cpgi3437 11 84570481 to 84570640 159 CpG island CpG island 3437