Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83633032-84433038

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Tssr103719 11 83639731 to 83639738 7 + TSS region transcription start site region 103719
Tssr109718 11 83640192 to 83640203 11 - TSS region transcription start site region 109718
Tssr103720 11 83640465 to 83640476 11 + TSS region transcription start site region 103720
Tssr103721 11 83640501 to 83640508 7 + TSS region transcription start site region 103721
Rpl9-ps1 11 83645046 to 83645621 575 - pseudogene ribosomal protein L9, pseudogene 1
Ccl3 11 83647844 to 83649355 1511 - protein coding gene chemokine (C-C motif) ligand 3
Tssr109719 11 83647976 to 83648002 26 - TSS region transcription start site region 109719
Tssr109720 11 83648075 to 83648086 11 - TSS region transcription start site region 109720
Tssr109721 11 83648095 to 83648199 104 - TSS region transcription start site region 109721
Tssr103722 11 83648128 to 83648142 14 + TSS region transcription start site region 103722
Tssr103723 11 83648157 to 83648162 5 + TSS region transcription start site region 103723
Tssr103724 11 83648182 to 83648209 27 + TSS region transcription start site region 103724
Tssr103725 11 83648217 to 83648222 5 + TSS region transcription start site region 103725
Tssr109722 11 83648219 to 83648239 20 - TSS region transcription start site region 109722
Tssr103726 11 83648228 to 83648239 11 + TSS region transcription start site region 103726
Tssr109723 11 83648282 to 83648293 11 - TSS region transcription start site region 109723
Tssr109724 11 83648399 to 83648445 46 - TSS region transcription start site region 109724
Tssr103727 11 83648528 to 83648531 3 + TSS region transcription start site region 103727
Tssr103728 11 83648541 to 83648544 3 + TSS region transcription start site region 103728
Tssr103729 11 83648580 to 83648591 11 + TSS region transcription start site region 103729
Tssr109725 11 83648598 to 83648605 7 - TSS region transcription start site region 109725
Tssr103730 11 83648601 to 83648606 5 + TSS region transcription start site region 103730
Tssr109726 11 83648618 to 83648643 25 - TSS region transcription start site region 109726
Tssr103731 11 83648632 to 83648648 16 + TSS region transcription start site region 103731
Tssr109727 11 83648660 to 83648687 27 - TSS region transcription start site region 109727
Tssr109728 11 83649046 to 83649056 10 - TSS region transcription start site region 109728
Tssr109729 11 83649084 to 83649090 6 - TSS region transcription start site region 109729
Tssr109730 11 83649349 to 83649365 16 - TSS region transcription start site region 109730
D11Dcr14 11 83650643 to 83650798 155 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 14
Tssr103732 11 83656075 to 83656089 14 + TSS region transcription start site region 103732
Tssr109731 11 83657417 to 83657426 9 - TSS region transcription start site region 109731
Tssr103733 11 83662534 to 83662544 10 + TSS region transcription start site region 103733
Tssr103734 11 83662556 to 83662559 3 + TSS region transcription start site region 103734
Tssr103735 11 83662579 to 83662594 15 + TSS region transcription start site region 103735
Ccl4 11 83662584 to 83664683 2099 + protein coding gene chemokine (C-C motif) ligand 4
Tssr103736 11 83663445 to 83663473 28 + TSS region transcription start site region 103736
Tssr103737 11 83663474 to 83663477 3 + TSS region transcription start site region 103737
Tssr103738 11 83663480 to 83663500 20 + TSS region transcription start site region 103738
Tssr103739 11 83663571 to 83663579 8 + TSS region transcription start site region 103739
Tssr103740 11 83664305 to 83664339 34 + TSS region transcription start site region 103740
Tssr103741 11 83664388 to 83664483 95 + TSS region transcription start site region 103741
Tssr103742 11 83664485 to 83664513 28 + TSS region transcription start site region 103742
Tssr103743 11 83664565 to 83664577 12 + TSS region transcription start site region 103743
Tssr103744 11 83664599 to 83664612 13 + TSS region transcription start site region 103744
Tssr103745 11 83677507 to 83677511 4 + TSS region transcription start site region 103745
Gm11433 11 83677518 to 83678345 827 + pseudogene predicted gene 11433
Gm11438 11 83681538 to 83681726 188 - pseudogene predicted gene 11438
Atp5k-ps3 11 83681538 to 83681671 133 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 3
D11Bhm145 11 83685093 to 83685177 84 DNA segment DNA segment, Chr 11, Boehm 145
Gm11432 11 83687610 to 83688456 846 + pseudogene predicted gene 11432
Tssr103746 11 83695264 to 83695268 4 + TSS region transcription start site region 103746
Gm11430 11 83695275 to 83696185 910 + pseudogene predicted gene 11430
Gm11429 11 83701291 to 83701434 143 + pseudogene predicted gene 11429
Tssr103747 11 83704053 to 83704090 37 + TSS region transcription start site region 103747
Wfdc17 11 83704056 to 83706269 2213 + protein coding gene WAP four-disulfide core domain 17
D11Mit119 11 83707624 to 83707776 152 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 119
Wfdc18 11 83709015 to 83711348 2333 + protein coding gene WAP four-disulfide core domain 18
Tssr103748 11 83709093 to 83709096 3 + TSS region transcription start site region 103748
Tssr103749 11 83709101 to 83709116 15 + TSS region transcription start site region 103749
Tssr103750 11 83711224 to 83711232 8 + TSS region transcription start site region 103750
Tssr103751 11 83711236 to 83711246 10 + TSS region transcription start site region 103751
Tssr103752 11 83731343 to 83731348 5 + TSS region transcription start site region 103752
Tssr109732 11 83737307 to 83737319 12 - TSS region transcription start site region 109732
Tssr103753 11 83740645 to 83740659 14 + TSS region transcription start site region 103753
Tssr103754 11 83740674 to 83740677 3 + TSS region transcription start site region 103754
Tssr103755 11 83740706 to 83740741 35 + TSS region transcription start site region 103755
Tssr103756 11 83740747 to 83740764 17 + TSS region transcription start site region 103756
Tssr3614 11 83743823 to 83743845 22 + TSS region transcription start site region 3614
1700018H16Rik 11 83744430 to 83744866 436 unclassified gene RIKEN cDNA 1700018H16 gene
Tssr103757 11 83746366 to 83746386 20 + TSS region transcription start site region 103757
Wfdc21 11 83746940 to 83752642 5702 + protein coding gene WAP four-disulfide core domain 21
Tssr103758 11 83746989 to 83747006 17 + TSS region transcription start site region 103758
Tssr103759 11 83748276 to 83748318 42 + TSS region transcription start site region 103759
Cpgi3419 11 83753449 to 83754317 868 CpG island CpG island 3419
Tssr109733 11 83753633 to 83753653 20 - TSS region transcription start site region 109733
Tssr103760 11 83753689 to 83753722 33 + TSS region transcription start site region 103760
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Gm22311 11 83764638 to 83764747 109 - rRNA gene predicted gene, 22311
Tssr103761 11 83771975 to 83771979 4 + TSS region transcription start site region 103761
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Lgth6 11 83842594 to 83842826 232 QTL body length 6
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211
Cpgi3420 11 83849406 to 83849781 375 CpG island CpG island 3420
Tssr109735 11 83849665 to 83849677 12 - TSS region transcription start site region 109735
Cpgi3421 11 83849973 to 83850368 395 CpG island CpG island 3421
Hnf1b 11 83850209 to 83905917 55708 + protein coding gene HNF1 homeobox B
Tssr109736 11 83850532 to 83850547 15 - TSS region transcription start site region 109736
Tssr109737 11 83850717 to 83850760 43 - TSS region transcription start site region 109737
Tssr109738 11 83850762 to 83850773 11 - TSS region transcription start site region 109738
Tssr103762 11 83850832 to 83850851 19 + TSS region transcription start site region 103762
Tssr103763 11 83850863 to 83850881 18 + TSS region transcription start site region 103763
Tssr3616 11 83850883 to 83850886 3 + TSS region transcription start site region 3616
Cpgi3422 11 83851073 to 83851534 461 CpG island CpG island 3422
Cpgi3423 11 83851951 to 83852361 410 CpG island CpG island 3423
Tssr103764 11 83852135 to 83852169 34 + TSS region transcription start site region 103764
Cpgi3424 11 83852688 to 83853688 1000 CpG island CpG island 3424
Tssr103765 11 83852920 to 83852944 24 + TSS region transcription start site region 103765
Tssr103766 11 83853816 to 83853826 10 + TSS region transcription start site region 103766
Tssr103767 11 83859321 to 83859328 7 + TSS region transcription start site region 103767
Tssr103768 11 83860613 to 83860631 18 + TSS region transcription start site region 103768
Tssr103769 11 83862809 to 83862820 11 + TSS region transcription start site region 103769
Tssr103770 11 83862874 to 83862885 11 + TSS region transcription start site region 103770
Cpgi3425 11 83863974 to 83864391 417 CpG island CpG island 3425
Tssr103771 11 83865621 to 83865631 10 + TSS region transcription start site region 103771
Tssr103772 11 83875528 to 83875555 27 + TSS region transcription start site region 103772
Tssr103773 11 83882700 to 83882728 28 + TSS region transcription start site region 103773
Tssr103774 11 83882730 to 83882760 30 + TSS region transcription start site region 103774
Tssr103775 11 83885494 to 83885504 10 + TSS region transcription start site region 103775
Tssr103776 11 83885675 to 83885706 31 + TSS region transcription start site region 103776
Tssr3617 11 83885775 to 83885811 36 + TSS region transcription start site region 3617
Tssr103777 11 83885869 to 83885879 10 + TSS region transcription start site region 103777
Tssr103778 11 83886092 to 83886102 10 + TSS region transcription start site region 103778
Cpgi3426 11 83941923 to 83942437 514 CpG island CpG island 3426
Tssr103779 11 83942084 to 83942105 21 + TSS region transcription start site region 103779
Ddx52 11 83942090 to 83963088 20998 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
Tssr103780 11 83942111 to 83942132 21 + TSS region transcription start site region 103780
Tssr103781 11 83942152 to 83942179 27 + TSS region transcription start site region 103781
Tssr103782 11 83942215 to 83942218 3 + TSS region transcription start site region 103782
Tssr103783 11 83955980 to 83956007 27 + TSS region transcription start site region 103783
D11Bhm146 11 83960499 to 83960617 118 DNA segment DNA segment, Chr 11, Boehm 146
Cpgi3427 11 83964182 to 83964861 679 CpG island CpG island 3427
Tssr103784 11 83964369 to 83964390 21 + TSS region transcription start site region 103784
Tssr103785 11 83964419 to 83964478 59 + TSS region transcription start site region 103785
Synrg 11 83964428 to 84044578 80150 + protein coding gene synergin, gamma
Tssr103786 11 84033032 to 84033038 6 + TSS region transcription start site region 103786
Dusp14 11 84048041 to 84069256 21215 - protein coding gene dual specificity phosphatase 14
Tssr109739 11 84067063 to 84067095 32 - TSS region transcription start site region 109739
Tssr109740 11 84067757 to 84067770 13 - TSS region transcription start site region 109740
Tssr109741 11 84067776 to 84067786 10 - TSS region transcription start site region 109741
Cpgi3428 11 84067864 to 84068862 998 CpG island CpG island 3428
Tssr109742 11 84068325 to 84068345 20 - TSS region transcription start site region 109742
Tssr109743 11 84068359 to 84068367 8 - TSS region transcription start site region 109743
Tssr109744 11 84068375 to 84068386 11 - TSS region transcription start site region 109744
Tssr109745 11 84068554 to 84068604 50 - TSS region transcription start site region 109745
Tssr109746 11 84068766 to 84068777 11 - TSS region transcription start site region 109746
Tssr3618 11 84068786 to 84068797 11 - TSS region transcription start site region 3618
Tssr109747 11 84069124 to 84069135 11 - TSS region transcription start site region 109747
Tssr109748 11 84069179 to 84069205 26 - TSS region transcription start site region 109748
Tada2a 11 84078920 to 84129600 50680 - protein coding gene transcriptional adaptor 2A
Tssr109749 11 84083620 to 84083624 4 - TSS region transcription start site region 109749
Tssr103787 11 84092783 to 84092787 4 + TSS region transcription start site region 103787
Tssr109750 11 84101978 to 84101982 4 - TSS region transcription start site region 109750
Cpgi3429 11 84129060 to 84130096 1036 CpG island CpG island 3429
Tssr109751 11 84129558 to 84129580 22 - TSS region transcription start site region 109751
Tssr109752 11 84129582 to 84129620 38 - TSS region transcription start site region 109752
Tssr109753 11 84129623 to 84129634 11 - TSS region transcription start site region 109753
Tssr103788 11 84129649 to 84129705 56 + TSS region transcription start site region 103788
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Tssr103789 11 84129725 to 84129732 7 + TSS region transcription start site region 103789
Tssr103790 11 84129737 to 84129755 18 + TSS region transcription start site region 103790
Tssr103791 11 84129757 to 84129784 27 + TSS region transcription start site region 103791
Gm11437 11 84148361 to 84167476 19115 - protein coding gene predicted gene 11437
Tssr3619 11 84160921 to 84160923 2 + TSS region transcription start site region 3619
Tssr109754 11 84164476 to 84164493 17 - TSS region transcription start site region 109754
Tssr109755 11 84167466 to 84167508 42 - TSS region transcription start site region 109755
Tssr103792 11 84173291 to 84173304 13 + TSS region transcription start site region 103792
Tssr103793 11 84173348 to 84173363 15 + TSS region transcription start site region 103793
Tssr103794 11 84173450 to 84173460 10 + TSS region transcription start site region 103794
Tssr103795 11 84173472 to 84173494 22 + TSS region transcription start site region 103795
Tssr103796 11 84173496 to 84173525 29 + TSS region transcription start site region 103796
Tssr103797 11 84177630 to 84177653 23 + TSS region transcription start site region 103797
Cpgi3430 11 84179174 to 84180508 1334 CpG island CpG island 3430
Tssr103798 11 84179611 to 84179657 46 + TSS region transcription start site region 103798
Tssr103799 11 84179658 to 84179687 29 + TSS region transcription start site region 103799
Tssr103800 11 84179792 to 84179849 57 + TSS region transcription start site region 103800
Tssr103801 11 84179852 to 84179863 11 + TSS region transcription start site region 103801
Tssr103802 11 84179866 to 84179877 11 + TSS region transcription start site region 103802
Tssr103803 11 84180309 to 84180360 51 + TSS region transcription start site region 103803
Gm37391 11 84189593 to 84191910 2317 + unclassified gene predicted gene, 37391
Gm31074 11 84204039 to 84208269 4230 - pseudogene predicted gene, 31074
D11Dcr35 11 84233331 to 84233426 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 35
Tssr103804 11 84249398 to 84249412 14 + TSS region transcription start site region 103804
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor