Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83447466-84887508

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361 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mol4 11 36391750 to 83590530 47198780 QTL modifier of LPS-response 4
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Mmp28 11 83440768 to 83463040 22272 - protein coding gene matrix metallopeptidase 28 (epilysin)
Cpgi3417 11 83462413 to 83463289 876 CpG island CpG island 3417
Tssr109659 11 83462981 to 83463038 57 - TSS region transcription start site region 109659
Cpgi3418 11 83472610 to 83473808 1198 CpG island CpG island 3418
Tssr103703 11 83473079 to 83473123 44 + TSS region transcription start site region 103703
Taf15 11 83473086 to 83506743 33657 + protein coding gene TATA-box binding protein associated factor 15
Tssr103704 11 83473140 to 83473157 17 + TSS region transcription start site region 103704
Tssr103705 11 83490608 to 83490612 4 + TSS region transcription start site region 103705
Tssr103706 11 83500108 to 83500117 9 + TSS region transcription start site region 103706
Gm32650 11 83511305 to 83546540 35235 + lncRNA gene predicted gene, 32650
Heatr9 11 83511736 to 83522175 10439 - protein coding gene HEAT repeat containing 9
Gm23247 11 83521156 to 83521262 106 + snRNA gene predicted gene, 23247
Tssr109660 11 83522102 to 83522109 7 - TSS region transcription start site region 109660
Tssr109661 11 83522126 to 83522140 14 - TSS region transcription start site region 109661
Tssr109662 11 83524729 to 83524734 5 - TSS region transcription start site region 109662
Tssr103707 11 83525777 to 83525788 11 + TSS region transcription start site region 103707
Ccl5 11 83525778 to 83530518 4740 - protein coding gene chemokine (C-C motif) ligand 5
Tssr103708 11 83525804 to 83525823 19 + TSS region transcription start site region 103708
Tssr109663 11 83525821 to 83525829 8 - TSS region transcription start site region 109663
Tssr109664 11 83525846 to 83525875 29 - TSS region transcription start site region 109664
Tssr109665 11 83525879 to 83525908 29 - TSS region transcription start site region 109665
Tssr109666 11 83525918 to 83525993 75 - TSS region transcription start site region 109666
Tssr103709 11 83525955 to 83525980 25 + TSS region transcription start site region 103709
Tssr103710 11 83525984 to 83525999 15 + TSS region transcription start site region 103710
Tssr109667 11 83525994 to 83526021 27 - TSS region transcription start site region 109667
Tssr103711 11 83526003 to 83526027 24 + TSS region transcription start site region 103711
Tssr109668 11 83526025 to 83526070 45 - TSS region transcription start site region 109668
Tssr109669 11 83526503 to 83526515 12 - TSS region transcription start site region 109669
Tssr109670 11 83527662 to 83527674 12 - TSS region transcription start site region 109670
Tssr109671 11 83529099 to 83529117 18 - TSS region transcription start site region 109671
Tssr109672 11 83529183 to 83529203 20 - TSS region transcription start site region 109672
Tssr109673 11 83529221 to 83529247 26 - TSS region transcription start site region 109673
Tssr109674 11 83530480 to 83530500 20 - TSS region transcription start site region 109674
Tssr109675 11 83530505 to 83530533 28 - TSS region transcription start site region 109675
Tssr109676 11 83530650 to 83530664 14 - TSS region transcription start site region 109676
Tssr103712 11 83532468 to 83532471 3 + TSS region transcription start site region 103712
Tssr103713 11 83535083 to 83535109 26 + TSS region transcription start site region 103713
Ccl16-ps 11 83565644 to 83569128 3484 - pseudogene chemokine (C-C motif) ligand 16, pseudogene
Ccl9 11 83572919 to 83578636 5717 - protein coding gene chemokine (C-C motif) ligand 9
Tssr109677 11 83573673 to 83573684 11 - TSS region transcription start site region 109677
Tssr109678 11 83574049 to 83574065 16 - TSS region transcription start site region 109678
Tssr109679 11 83574327 to 83574349 22 - TSS region transcription start site region 109679
Tssr109680 11 83574589 to 83574600 11 - TSS region transcription start site region 109680
Tssr103714 11 83574647 to 83574680 33 + TSS region transcription start site region 103714
Tssr103715 11 83574688 to 83574730 42 + TSS region transcription start site region 103715
Tssr109681 11 83574711 to 83574719 8 - TSS region transcription start site region 109681
Tssr109682 11 83574980 to 83574994 14 - TSS region transcription start site region 109682
Tssr109683 11 83575031 to 83575042 11 - TSS region transcription start site region 109683
Tssr109684 11 83575057 to 83575068 11 - TSS region transcription start site region 109684
Tssr109685 11 83575102 to 83575109 7 - TSS region transcription start site region 109685
Tssr109686 11 83575165 to 83575178 13 - TSS region transcription start site region 109686
Tssr109687 11 83575214 to 83575232 18 - TSS region transcription start site region 109687
Tssr109688 11 83575261 to 83575273 12 - TSS region transcription start site region 109688
Tssr109689 11 83575304 to 83575315 11 - TSS region transcription start site region 109689
Tssr109690 11 83575317 to 83575324 7 - TSS region transcription start site region 109690
Tssr109691 11 83575327 to 83575338 11 - TSS region transcription start site region 109691
Tssr103716 11 83575350 to 83575366 16 + TSS region transcription start site region 103716
Tssr109692 11 83575358 to 83575366 8 - TSS region transcription start site region 109692
Tssr109693 11 83575469 to 83575483 14 - TSS region transcription start site region 109693
Tssr109694 11 83575863 to 83575910 47 - TSS region transcription start site region 109694
Tssr109695 11 83575913 to 83575958 45 - TSS region transcription start site region 109695
Tssr109696 11 83576947 to 83576954 7 - TSS region transcription start site region 109696
Tssr109697 11 83577137 to 83577147 10 - TSS region transcription start site region 109697
Tssr109698 11 83578420 to 83578428 8 - TSS region transcription start site region 109698
Tssr109699 11 83578467 to 83578477 10 - TSS region transcription start site region 109699
Tssr109700 11 83578496 to 83578508 12 - TSS region transcription start site region 109700
Tssr109701 11 83578529 to 83578534 5 - TSS region transcription start site region 109701
Tssr109702 11 83578586 to 83578595 9 - TSS region transcription start site region 109702
Tssr109703 11 83578596 to 83578619 23 - TSS region transcription start site region 109703
Tssr109704 11 83578620 to 83578641 21 - TSS region transcription start site region 109704
E230016K23Rik 11 83582061 to 83623693 41632 + lncRNA gene RIKEN cDNA E230016K23 gene
Tssr103717 11 83582073 to 83582090 17 + TSS region transcription start site region 103717
Ccl6 11 83587886 to 83593087 5201 - protein coding gene chemokine (C-C motif) ligand 6
Tssr109705 11 83588156 to 83588167 11 - TSS region transcription start site region 109705
Tssr109706 11 83588275 to 83588293 18 - TSS region transcription start site region 109706
Tssr103718 11 83588387 to 83588402 15 + TSS region transcription start site region 103718
Tssr109707 11 83588608 to 83588611 3 - TSS region transcription start site region 109707
Tssr109708 11 83588709 to 83588712 3 - TSS region transcription start site region 109708
Tssr109709 11 83588780 to 83588824 44 - TSS region transcription start site region 109709
Tssr109710 11 83588915 to 83588928 13 - TSS region transcription start site region 109710
D11Pas18 11 83589312 to 83589790 478 DNA segment DNA segment, Chr 11, Pasteur Institute 18
Tssr109711 11 83589341 to 83589418 77 - TSS region transcription start site region 109711
Tssr109712 11 83589775 to 83589803 28 - TSS region transcription start site region 109712
D11Mit120 11 83590409 to 83590530 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 120
Tssr109713 11 83590627 to 83590643 16 - TSS region transcription start site region 109713
Tssr109714 11 83592552 to 83592570 18 - TSS region transcription start site region 109714
Tssr109715 11 83592981 to 83592999 18 - TSS region transcription start site region 109715
Gm38933 11 83594426 to 83604745 10319 - lncRNA gene predicted gene, 38933
D11Mit97 11 83603304 to 83603565 261 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 97
Tssr3610 11 83603702 to 83603732 30 + TSS region transcription start site region 3610
Tssr109716 11 83604693 to 83604702 9 - TSS region transcription start site region 109716
Tssr109717 11 83604719 to 83604760 41 - TSS region transcription start site region 109717
Tssr3611 11 83604829 to 83604836 7 - TSS region transcription start site region 3611
Tssr3612 11 83604966 to 83604976 10 + TSS region transcription start site region 3612
Tssr3613 11 83605613 to 83605649 36 - TSS region transcription start site region 3613
Tssr103719 11 83639731 to 83639738 7 + TSS region transcription start site region 103719
Tssr109718 11 83640192 to 83640203 11 - TSS region transcription start site region 109718
Tssr103720 11 83640465 to 83640476 11 + TSS region transcription start site region 103720
Tssr103721 11 83640501 to 83640508 7 + TSS region transcription start site region 103721
Rpl9-ps1 11 83645046 to 83645621 575 - pseudogene ribosomal protein L9, pseudogene 1
Ccl3 11 83647844 to 83649355 1511 - protein coding gene chemokine (C-C motif) ligand 3
Tssr109719 11 83647976 to 83648002 26 - TSS region transcription start site region 109719
Tssr109720 11 83648075 to 83648086 11 - TSS region transcription start site region 109720
Tssr109721 11 83648095 to 83648199 104 - TSS region transcription start site region 109721
Tssr103722 11 83648128 to 83648142 14 + TSS region transcription start site region 103722
Tssr103723 11 83648157 to 83648162 5 + TSS region transcription start site region 103723
Tssr103724 11 83648182 to 83648209 27 + TSS region transcription start site region 103724
Tssr103725 11 83648217 to 83648222 5 + TSS region transcription start site region 103725
Tssr109722 11 83648219 to 83648239 20 - TSS region transcription start site region 109722
Tssr103726 11 83648228 to 83648239 11 + TSS region transcription start site region 103726
Tssr109723 11 83648282 to 83648293 11 - TSS region transcription start site region 109723
Tssr109724 11 83648399 to 83648445 46 - TSS region transcription start site region 109724
Tssr103727 11 83648528 to 83648531 3 + TSS region transcription start site region 103727
Tssr103728 11 83648541 to 83648544 3 + TSS region transcription start site region 103728
Tssr103729 11 83648580 to 83648591 11 + TSS region transcription start site region 103729
Tssr109725 11 83648598 to 83648605 7 - TSS region transcription start site region 109725
Tssr103730 11 83648601 to 83648606 5 + TSS region transcription start site region 103730
Tssr109726 11 83648618 to 83648643 25 - TSS region transcription start site region 109726
Tssr103731 11 83648632 to 83648648 16 + TSS region transcription start site region 103731
Tssr109727 11 83648660 to 83648687 27 - TSS region transcription start site region 109727
Tssr109728 11 83649046 to 83649056 10 - TSS region transcription start site region 109728
Tssr109729 11 83649084 to 83649090 6 - TSS region transcription start site region 109729
Tssr109730 11 83649349 to 83649365 16 - TSS region transcription start site region 109730
D11Dcr14 11 83650643 to 83650798 155 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 14
Tssr103732 11 83656075 to 83656089 14 + TSS region transcription start site region 103732
Tssr109731 11 83657417 to 83657426 9 - TSS region transcription start site region 109731
Tssr103733 11 83662534 to 83662544 10 + TSS region transcription start site region 103733
Tssr103734 11 83662556 to 83662559 3 + TSS region transcription start site region 103734
Tssr103735 11 83662579 to 83662594 15 + TSS region transcription start site region 103735
Ccl4 11 83662584 to 83664683 2099 + protein coding gene chemokine (C-C motif) ligand 4
Tssr103736 11 83663445 to 83663473 28 + TSS region transcription start site region 103736
Tssr103737 11 83663474 to 83663477 3 + TSS region transcription start site region 103737
Tssr103738 11 83663480 to 83663500 20 + TSS region transcription start site region 103738
Tssr103739 11 83663571 to 83663579 8 + TSS region transcription start site region 103739
Tssr103740 11 83664305 to 83664339 34 + TSS region transcription start site region 103740
Tssr103741 11 83664388 to 83664483 95 + TSS region transcription start site region 103741
Tssr103742 11 83664485 to 83664513 28 + TSS region transcription start site region 103742
Tssr103743 11 83664565 to 83664577 12 + TSS region transcription start site region 103743
Tssr103744 11 83664599 to 83664612 13 + TSS region transcription start site region 103744
Tssr103745 11 83677507 to 83677511 4 + TSS region transcription start site region 103745
Gm11433 11 83677518 to 83678345 827 + pseudogene predicted gene 11433
Gm11438 11 83681538 to 83681726 188 - pseudogene predicted gene 11438
Atp5k-ps3 11 83681538 to 83681671 133 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 3
D11Bhm145 11 83685093 to 83685177 84 DNA segment DNA segment, Chr 11, Boehm 145
Gm11432 11 83687610 to 83688456 846 + pseudogene predicted gene 11432
Tssr103746 11 83695264 to 83695268 4 + TSS region transcription start site region 103746
Gm11430 11 83695275 to 83696185 910 + pseudogene predicted gene 11430
Gm11429 11 83701291 to 83701434 143 + pseudogene predicted gene 11429
Tssr103747 11 83704053 to 83704090 37 + TSS region transcription start site region 103747
Wfdc17 11 83704056 to 83706269 2213 + protein coding gene WAP four-disulfide core domain 17
D11Mit119 11 83707624 to 83707776 152 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 119
Wfdc18 11 83709015 to 83711348 2333 + protein coding gene WAP four-disulfide core domain 18
Tssr103748 11 83709093 to 83709096 3 + TSS region transcription start site region 103748
Tssr103749 11 83709101 to 83709116 15 + TSS region transcription start site region 103749
Tssr103750 11 83711224 to 83711232 8 + TSS region transcription start site region 103750
Tssr103751 11 83711236 to 83711246 10 + TSS region transcription start site region 103751
Tssr103752 11 83731343 to 83731348 5 + TSS region transcription start site region 103752
Tssr109732 11 83737307 to 83737319 12 - TSS region transcription start site region 109732
Tssr103753 11 83740645 to 83740659 14 + TSS region transcription start site region 103753
Tssr103754 11 83740674 to 83740677 3 + TSS region transcription start site region 103754
Tssr103755 11 83740706 to 83740741 35 + TSS region transcription start site region 103755
Tssr103756 11 83740747 to 83740764 17 + TSS region transcription start site region 103756
Tssr3614 11 83743823 to 83743845 22 + TSS region transcription start site region 3614
1700018H16Rik 11 83744430 to 83744866 436 unclassified gene RIKEN cDNA 1700018H16 gene
Tssr103757 11 83746366 to 83746386 20 + TSS region transcription start site region 103757
Wfdc21 11 83746940 to 83752642 5702 + protein coding gene WAP four-disulfide core domain 21
Tssr103758 11 83746989 to 83747006 17 + TSS region transcription start site region 103758
Tssr103759 11 83748276 to 83748318 42 + TSS region transcription start site region 103759
Cpgi3419 11 83753449 to 83754317 868 CpG island CpG island 3419
Tssr109733 11 83753633 to 83753653 20 - TSS region transcription start site region 109733
Tssr103760 11 83753689 to 83753722 33 + TSS region transcription start site region 103760
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Gm22311 11 83764638 to 83764747 109 - rRNA gene predicted gene, 22311
Tssr103761 11 83771975 to 83771979 4 + TSS region transcription start site region 103761
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Lgth6 11 83842594 to 83842826 232 QTL body length 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211
Cpgi3420 11 83849406 to 83849781 375 CpG island CpG island 3420
Tssr109735 11 83849665 to 83849677 12 - TSS region transcription start site region 109735
Cpgi3421 11 83849973 to 83850368 395 CpG island CpG island 3421
Hnf1b 11 83850209 to 83905917 55708 + protein coding gene HNF1 homeobox B
Tssr109736 11 83850532 to 83850547 15 - TSS region transcription start site region 109736
Tssr109737 11 83850717 to 83850760 43 - TSS region transcription start site region 109737
Tssr109738 11 83850762 to 83850773 11 - TSS region transcription start site region 109738
Tssr103762 11 83850832 to 83850851 19 + TSS region transcription start site region 103762
Tssr103763 11 83850863 to 83850881 18 + TSS region transcription start site region 103763