Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83438474-83888477

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mol4 11 36391750 to 83590530 47198780 QTL modifier of LPS-response 4
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
1700020L24Rik 11 83437694 to 83441238 3544 + protein coding gene RIKEN cDNA 1700020L24 gene
Tssr103701 11 83439953 to 83439967 14 + TSS region transcription start site region 103701
Cpgi3414 11 83440085 to 83441156 1071 CpG island CpG island 3414
Tssr103702 11 83440397 to 83440400 3 + TSS region transcription start site region 103702
Mmp28 11 83440768 to 83463040 22272 - protein coding gene matrix metallopeptidase 28 (epilysin)
Cpgi3415 11 83442537 to 83442998 461 CpG island CpG island 3415
Cpgi3416 11 83444655 to 83445321 666 CpG island CpG island 3416
Cpgi3417 11 83462413 to 83463289 876 CpG island CpG island 3417
Tssr109659 11 83462981 to 83463038 57 - TSS region transcription start site region 109659
Cpgi3418 11 83472610 to 83473808 1198 CpG island CpG island 3418
Tssr103703 11 83473079 to 83473123 44 + TSS region transcription start site region 103703
Taf15 11 83473086 to 83506743 33657 + protein coding gene TATA-box binding protein associated factor 15
Tssr103704 11 83473140 to 83473157 17 + TSS region transcription start site region 103704
Tssr103705 11 83490608 to 83490612 4 + TSS region transcription start site region 103705
Tssr103706 11 83500108 to 83500117 9 + TSS region transcription start site region 103706
Gm32650 11 83511305 to 83546540 35235 + lncRNA gene predicted gene, 32650
Heatr9 11 83511736 to 83522175 10439 - protein coding gene HEAT repeat containing 9
Gm23247 11 83521156 to 83521262 106 + snRNA gene predicted gene, 23247
Tssr109660 11 83522102 to 83522109 7 - TSS region transcription start site region 109660
Tssr109661 11 83522126 to 83522140 14 - TSS region transcription start site region 109661
Tssr109662 11 83524729 to 83524734 5 - TSS region transcription start site region 109662
Tssr103707 11 83525777 to 83525788 11 + TSS region transcription start site region 103707
Ccl5 11 83525778 to 83530518 4740 - protein coding gene chemokine (C-C motif) ligand 5
Tssr103708 11 83525804 to 83525823 19 + TSS region transcription start site region 103708
Tssr109663 11 83525821 to 83525829 8 - TSS region transcription start site region 109663
Tssr109664 11 83525846 to 83525875 29 - TSS region transcription start site region 109664
Tssr109665 11 83525879 to 83525908 29 - TSS region transcription start site region 109665
Tssr109666 11 83525918 to 83525993 75 - TSS region transcription start site region 109666
Tssr103709 11 83525955 to 83525980 25 + TSS region transcription start site region 103709
Tssr103710 11 83525984 to 83525999 15 + TSS region transcription start site region 103710
Tssr109667 11 83525994 to 83526021 27 - TSS region transcription start site region 109667
Tssr103711 11 83526003 to 83526027 24 + TSS region transcription start site region 103711
Tssr109668 11 83526025 to 83526070 45 - TSS region transcription start site region 109668
Tssr109669 11 83526503 to 83526515 12 - TSS region transcription start site region 109669
Tssr109670 11 83527662 to 83527674 12 - TSS region transcription start site region 109670
Tssr109671 11 83529099 to 83529117 18 - TSS region transcription start site region 109671
Tssr109672 11 83529183 to 83529203 20 - TSS region transcription start site region 109672
Tssr109673 11 83529221 to 83529247 26 - TSS region transcription start site region 109673
Tssr109674 11 83530480 to 83530500 20 - TSS region transcription start site region 109674
Tssr109675 11 83530505 to 83530533 28 - TSS region transcription start site region 109675
Tssr109676 11 83530650 to 83530664 14 - TSS region transcription start site region 109676
Tssr103712 11 83532468 to 83532471 3 + TSS region transcription start site region 103712
Tssr103713 11 83535083 to 83535109 26 + TSS region transcription start site region 103713
Ccl16-ps 11 83565644 to 83569128 3484 - pseudogene chemokine (C-C motif) ligand 16, pseudogene
Ccl9 11 83572919 to 83578636 5717 - protein coding gene chemokine (C-C motif) ligand 9
Tssr109677 11 83573673 to 83573684 11 - TSS region transcription start site region 109677
Tssr109678 11 83574049 to 83574065 16 - TSS region transcription start site region 109678
Tssr109679 11 83574327 to 83574349 22 - TSS region transcription start site region 109679
Tssr109680 11 83574589 to 83574600 11 - TSS region transcription start site region 109680
Tssr103714 11 83574647 to 83574680 33 + TSS region transcription start site region 103714
Tssr103715 11 83574688 to 83574730 42 + TSS region transcription start site region 103715
Tssr109681 11 83574711 to 83574719 8 - TSS region transcription start site region 109681
Tssr109682 11 83574980 to 83574994 14 - TSS region transcription start site region 109682
Tssr109683 11 83575031 to 83575042 11 - TSS region transcription start site region 109683
Tssr109684 11 83575057 to 83575068 11 - TSS region transcription start site region 109684
Tssr109685 11 83575102 to 83575109 7 - TSS region transcription start site region 109685
Tssr109686 11 83575165 to 83575178 13 - TSS region transcription start site region 109686
Tssr109687 11 83575214 to 83575232 18 - TSS region transcription start site region 109687
Tssr109688 11 83575261 to 83575273 12 - TSS region transcription start site region 109688
Tssr109689 11 83575304 to 83575315 11 - TSS region transcription start site region 109689
Tssr109690 11 83575317 to 83575324 7 - TSS region transcription start site region 109690
Tssr109691 11 83575327 to 83575338 11 - TSS region transcription start site region 109691
Tssr103716 11 83575350 to 83575366 16 + TSS region transcription start site region 103716
Tssr109692 11 83575358 to 83575366 8 - TSS region transcription start site region 109692
Tssr109693 11 83575469 to 83575483 14 - TSS region transcription start site region 109693
Tssr109694 11 83575863 to 83575910 47 - TSS region transcription start site region 109694
Tssr109695 11 83575913 to 83575958 45 - TSS region transcription start site region 109695
Tssr109696 11 83576947 to 83576954 7 - TSS region transcription start site region 109696
Tssr109697 11 83577137 to 83577147 10 - TSS region transcription start site region 109697
Tssr109698 11 83578420 to 83578428 8 - TSS region transcription start site region 109698
Tssr109699 11 83578467 to 83578477 10 - TSS region transcription start site region 109699
Tssr109700 11 83578496 to 83578508 12 - TSS region transcription start site region 109700
Tssr109701 11 83578529 to 83578534 5 - TSS region transcription start site region 109701
Tssr109702 11 83578586 to 83578595 9 - TSS region transcription start site region 109702
Tssr109703 11 83578596 to 83578619 23 - TSS region transcription start site region 109703
Tssr109704 11 83578620 to 83578641 21 - TSS region transcription start site region 109704
E230016K23Rik 11 83582061 to 83623693 41632 + lncRNA gene RIKEN cDNA E230016K23 gene
Tssr103717 11 83582073 to 83582090 17 + TSS region transcription start site region 103717
Ccl6 11 83587886 to 83593087 5201 - protein coding gene chemokine (C-C motif) ligand 6
Tssr109705 11 83588156 to 83588167 11 - TSS region transcription start site region 109705
Tssr109706 11 83588275 to 83588293 18 - TSS region transcription start site region 109706
Tssr103718 11 83588387 to 83588402 15 + TSS region transcription start site region 103718
Tssr109707 11 83588608 to 83588611 3 - TSS region transcription start site region 109707
Tssr109708 11 83588709 to 83588712 3 - TSS region transcription start site region 109708
Tssr109709 11 83588780 to 83588824 44 - TSS region transcription start site region 109709
Tssr109710 11 83588915 to 83588928 13 - TSS region transcription start site region 109710
D11Pas18 11 83589312 to 83589790 478 DNA segment DNA segment, Chr 11, Pasteur Institute 18
Tssr109711 11 83589341 to 83589418 77 - TSS region transcription start site region 109711
Tssr109712 11 83589775 to 83589803 28 - TSS region transcription start site region 109712
D11Mit120 11 83590409 to 83590530 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 120
Tssr109713 11 83590627 to 83590643 16 - TSS region transcription start site region 109713
Tssr109714 11 83592552 to 83592570 18 - TSS region transcription start site region 109714
Tssr109715 11 83592981 to 83592999 18 - TSS region transcription start site region 109715
Gm38933 11 83594426 to 83604745 10319 - lncRNA gene predicted gene, 38933
D11Mit97 11 83603304 to 83603565 261 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 97
Tssr3610 11 83603702 to 83603732 30 + TSS region transcription start site region 3610
Tssr109716 11 83604693 to 83604702 9 - TSS region transcription start site region 109716
Tssr109717 11 83604719 to 83604760 41 - TSS region transcription start site region 109717
Tssr3611 11 83604829 to 83604836 7 - TSS region transcription start site region 3611
Tssr3612 11 83604966 to 83604976 10 + TSS region transcription start site region 3612
Tssr3613 11 83605613 to 83605649 36 - TSS region transcription start site region 3613
Tssr103719 11 83639731 to 83639738 7 + TSS region transcription start site region 103719
Tssr109718 11 83640192 to 83640203 11 - TSS region transcription start site region 109718
Tssr103720 11 83640465 to 83640476 11 + TSS region transcription start site region 103720
Tssr103721 11 83640501 to 83640508 7 + TSS region transcription start site region 103721
Rpl9-ps1 11 83645046 to 83645621 575 - pseudogene ribosomal protein L9, pseudogene 1
Ccl3 11 83647844 to 83649355 1511 - protein coding gene chemokine (C-C motif) ligand 3
Tssr109719 11 83647976 to 83648002 26 - TSS region transcription start site region 109719
Tssr109720 11 83648075 to 83648086 11 - TSS region transcription start site region 109720
Tssr109721 11 83648095 to 83648199 104 - TSS region transcription start site region 109721
Tssr103722 11 83648128 to 83648142 14 + TSS region transcription start site region 103722
Tssr103723 11 83648157 to 83648162 5 + TSS region transcription start site region 103723
Tssr103724 11 83648182 to 83648209 27 + TSS region transcription start site region 103724
Tssr103725 11 83648217 to 83648222 5 + TSS region transcription start site region 103725
Tssr109722 11 83648219 to 83648239 20 - TSS region transcription start site region 109722
Tssr103726 11 83648228 to 83648239 11 + TSS region transcription start site region 103726
Tssr109723 11 83648282 to 83648293 11 - TSS region transcription start site region 109723
Tssr109724 11 83648399 to 83648445 46 - TSS region transcription start site region 109724
Tssr103727 11 83648528 to 83648531 3 + TSS region transcription start site region 103727
Tssr103728 11 83648541 to 83648544 3 + TSS region transcription start site region 103728
Tssr103729 11 83648580 to 83648591 11 + TSS region transcription start site region 103729
Tssr109725 11 83648598 to 83648605 7 - TSS region transcription start site region 109725
Tssr103730 11 83648601 to 83648606 5 + TSS region transcription start site region 103730
Tssr109726 11 83648618 to 83648643 25 - TSS region transcription start site region 109726
Tssr103731 11 83648632 to 83648648 16 + TSS region transcription start site region 103731
Tssr109727 11 83648660 to 83648687 27 - TSS region transcription start site region 109727
Tssr109728 11 83649046 to 83649056 10 - TSS region transcription start site region 109728
Tssr109729 11 83649084 to 83649090 6 - TSS region transcription start site region 109729
Tssr109730 11 83649349 to 83649365 16 - TSS region transcription start site region 109730
D11Dcr14 11 83650643 to 83650798 155 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 14
Tssr103732 11 83656075 to 83656089 14 + TSS region transcription start site region 103732
Tssr109731 11 83657417 to 83657426 9 - TSS region transcription start site region 109731
Tssr103733 11 83662534 to 83662544 10 + TSS region transcription start site region 103733
Tssr103734 11 83662556 to 83662559 3 + TSS region transcription start site region 103734
Tssr103735 11 83662579 to 83662594 15 + TSS region transcription start site region 103735
Ccl4 11 83662584 to 83664683 2099 + protein coding gene chemokine (C-C motif) ligand 4
Tssr103736 11 83663445 to 83663473 28 + TSS region transcription start site region 103736
Tssr103737 11 83663474 to 83663477 3 + TSS region transcription start site region 103737
Tssr103738 11 83663480 to 83663500 20 + TSS region transcription start site region 103738
Tssr103739 11 83663571 to 83663579 8 + TSS region transcription start site region 103739
Tssr103740 11 83664305 to 83664339 34 + TSS region transcription start site region 103740
Tssr103741 11 83664388 to 83664483 95 + TSS region transcription start site region 103741
Tssr103742 11 83664485 to 83664513 28 + TSS region transcription start site region 103742
Tssr103743 11 83664565 to 83664577 12 + TSS region transcription start site region 103743
Tssr103744 11 83664599 to 83664612 13 + TSS region transcription start site region 103744
Tssr103745 11 83677507 to 83677511 4 + TSS region transcription start site region 103745
Gm11433 11 83677518 to 83678345 827 + pseudogene predicted gene 11433
Gm11438 11 83681538 to 83681726 188 - pseudogene predicted gene 11438
Atp5k-ps3 11 83681538 to 83681671 133 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 3
D11Bhm145 11 83685093 to 83685177 84 DNA segment DNA segment, Chr 11, Boehm 145
Gm11432 11 83687610 to 83688456 846 + pseudogene predicted gene 11432
Tssr103746 11 83695264 to 83695268 4 + TSS region transcription start site region 103746
Gm11430 11 83695275 to 83696185 910 + pseudogene predicted gene 11430
Gm11429 11 83701291 to 83701434 143 + pseudogene predicted gene 11429
Tssr103747 11 83704053 to 83704090 37 + TSS region transcription start site region 103747
Wfdc17 11 83704056 to 83706269 2213 + protein coding gene WAP four-disulfide core domain 17
D11Mit119 11 83707624 to 83707776 152 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 119
Wfdc18 11 83709015 to 83711348 2333 + protein coding gene WAP four-disulfide core domain 18
Tssr103748 11 83709093 to 83709096 3 + TSS region transcription start site region 103748
Tssr103749 11 83709101 to 83709116 15 + TSS region transcription start site region 103749
Tssr103750 11 83711224 to 83711232 8 + TSS region transcription start site region 103750
Tssr103751 11 83711236 to 83711246 10 + TSS region transcription start site region 103751
Tssr103752 11 83731343 to 83731348 5 + TSS region transcription start site region 103752
Tssr109732 11 83737307 to 83737319 12 - TSS region transcription start site region 109732
Tssr103753 11 83740645 to 83740659 14 + TSS region transcription start site region 103753
Tssr103754 11 83740674 to 83740677 3 + TSS region transcription start site region 103754
Tssr103755 11 83740706 to 83740741 35 + TSS region transcription start site region 103755
Tssr103756 11 83740747 to 83740764 17 + TSS region transcription start site region 103756
Tssr3614 11 83743823 to 83743845 22 + TSS region transcription start site region 3614
1700018H16Rik 11 83744430 to 83744866 436 unclassified gene RIKEN cDNA 1700018H16 gene
Tssr103757 11 83746366 to 83746386 20 + TSS region transcription start site region 103757
Wfdc21 11 83746940 to 83752642 5702 + protein coding gene WAP four-disulfide core domain 21
Tssr103758 11 83746989 to 83747006 17 + TSS region transcription start site region 103758
Tssr103759 11 83748276 to 83748318 42 + TSS region transcription start site region 103759
Cpgi3419 11 83753449 to 83754317 868 CpG island CpG island 3419
Tssr109733 11 83753633 to 83753653 20 - TSS region transcription start site region 109733
Tssr103760 11 83753689 to 83753722 33 + TSS region transcription start site region 103760
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Gm22311 11 83764638 to 83764747 109 - rRNA gene predicted gene, 22311
Tssr103761 11 83771975 to 83771979 4 + TSS region transcription start site region 103761
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Lgth6 11 83842594 to 83842826 232 QTL body length 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211
Cpgi3420 11 83849406 to 83849781 375 CpG island CpG island 3420
Tssr109735 11 83849665 to 83849677 12 - TSS region transcription start site region 109735
Cpgi3421 11 83849973 to 83850368 395 CpG island CpG island 3421
Hnf1b 11 83850209 to 83905917 55708 + protein coding gene HNF1 homeobox B