Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83200255-83510259

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slfn3 11 83191330 to 83215154 23824 + protein coding gene schlafen 3
Tssr103673 11 83223561 to 83223601 40 + TSS region transcription start site region 103673
AI662270 11 83223576 to 83226584 3008 + lncRNA gene expressed sequence AI662270
Tssr103674 11 83224439 to 83224491 52 + TSS region transcription start site region 103674
Tssr103675 11 83226041 to 83226070 29 + TSS region transcription start site region 103675
Tssr109648 11 83237446 to 83237450 4 - TSS region transcription start site region 109648
Tssr103676 11 83240272 to 83240296 24 + TSS region transcription start site region 103676
Gm38924 11 83244748 to 83254270 9522 - lncRNA gene predicted gene, 38924
Gm11427 11 83254267 to 83260542 6275 + pseudogene predicted gene 11427
Gm23444 11 83271498 to 83271688 190 + snRNA gene predicted gene, 23444
Slfn14 11 83275110 to 83286726 11616 - protein coding gene schlafen 14
Tssr109649 11 83286664 to 83286679 15 - TSS region transcription start site region 109649
Tssr109650 11 83286680 to 83286699 19 - TSS region transcription start site region 109650
Tssr109651 11 83286722 to 83286729 7 - TSS region transcription start site region 109651
Tssr109652 11 83286743 to 83286752 9 - TSS region transcription start site region 109652
Cpgi3408 11 83291525 to 83291931 406 CpG island CpG island 3408
Tssr103677 11 83291671 to 83291682 11 + TSS region transcription start site region 103677
Tssr103678 11 83291683 to 83291709 26 + TSS region transcription start site region 103678
AA465934 11 83291699 to 83294632 2933 + lncRNA gene expressed sequence AA465934
Tssr103679 11 83291719 to 83291748 29 + TSS region transcription start site region 103679
Tssr103680 11 83291966 to 83291967 1 + TSS region transcription start site region 103680
AI450353 11 83293430 to 83294929 1499 + lncRNA gene expressed sequence AI450353
Tssr103681 11 83293454 to 83293458 4 + TSS region transcription start site region 103681
Snord7 11 83294304 to 83294399 95 + snoRNA gene small nucleolar RNA, C/D box 7
Pex12 11 83294645 to 83298977 4332 - protein coding gene peroxisomal biogenesis factor 12
Cpgi3409 11 83298608 to 83299233 625 CpG island CpG island 3409
Tssr109653 11 83298845 to 83298870 25 - TSS region transcription start site region 109653
Tssr109654 11 83298873 to 83298905 32 - TSS region transcription start site region 109654
Tssr109655 11 83298910 to 83298983 73 - TSS region transcription start site region 109655
Tssr103682 11 83298910 to 83298925 15 + TSS region transcription start site region 103682
Tssr103683 11 83298933 to 83298958 25 + TSS region transcription start site region 103683
Tssr103684 11 83299005 to 83299046 41 + TSS region transcription start site region 103684
Ap2b1 11 83299024 to 83405035 106011 + protein coding gene adaptor-related protein complex 2, beta 1 subunit
Tssr103685 11 83299063 to 83299091 28 + TSS region transcription start site region 103685
Cpgi3410 11 83302525 to 83303283 758 CpG island CpG island 3410
Tssr109656 11 83302614 to 83302637 23 - TSS region transcription start site region 109656
Tssr103686 11 83302641 to 83302803 162 + TSS region transcription start site region 103686
Tssr103687 11 83302817 to 83302822 5 + TSS region transcription start site region 103687
Tssr103688 11 83305534 to 83305541 7 + TSS region transcription start site region 103688
Tssr103689 11 83321647 to 83321650 3 + TSS region transcription start site region 103689
D11Pas16 11 83322842 to 83322950 108 DNA segment DNA segment, Chr 11, Pasteur Institute 16
D11Pas17 11 83346895 to 83347055 160 DNA segment DNA segment, Chr 11, Pasteur Institute 17
Tssr103690 11 83355255 to 83355259 4 + TSS region transcription start site region 103690
Gm23951 11 83366870 to 83367001 131 - snoRNA gene predicted gene, 23951
Tssr109657 11 83393233 to 83393248 15 - TSS region transcription start site region 109657
D11Bhm143 11 83400688 to 83400785 97 DNA segment DNA segment, Chr 11, Boehm 143
Tssr103691 11 83404988 to 83404995 7 + TSS region transcription start site region 103691
Cpgi3411 11 83409123 to 83410358 1235 CpG island CpG island 3411
Rasl10b 11 83409142 to 83421039 11897 + protein coding gene RAS-like, family 10, member B
Tssr103692 11 83409216 to 83409289 73 + TSS region transcription start site region 103692
Tssr103693 11 83409655 to 83409718 63 + TSS region transcription start site region 103693
Tssr103694 11 83409720 to 83409727 7 + TSS region transcription start site region 103694
Tssr103695 11 83409736 to 83409749 13 + TSS region transcription start site region 103695
D11Bhm144 11 83411670 to 83411732 62 DNA segment DNA segment, Chr 11, Boehm 144
Cpgi3412 11 83418370 to 83419490 1120 CpG island CpG island 3412
Tssr103696 11 83418961 to 83418977 16 + TSS region transcription start site region 103696
Gas2l2 11 83421902 to 83429455 7553 - protein coding gene growth arrest-specific 2 like 2
Cpgi3413 11 83427033 to 83427607 574 CpG island CpG island 3413
Tssr109658 11 83429807 to 83429832 25 - TSS region transcription start site region 109658
Tssr103697 11 83437646 to 83437651 5 + TSS region transcription start site region 103697
Tssr103698 11 83437655 to 83437671 16 + TSS region transcription start site region 103698
Tssr103699 11 83437678 to 83437708 30 + TSS region transcription start site region 103699
1700020L24Rik 11 83437694 to 83441238 3544 + protein coding gene RIKEN cDNA 1700020L24 gene
Tssr103700 11 83437709 to 83437718 9 + TSS region transcription start site region 103700
Tssr3609 11 83437726 to 83437727 1 + TSS region transcription start site region 3609
Tssr103701 11 83439953 to 83439967 14 + TSS region transcription start site region 103701
Cpgi3414 11 83440085 to 83441156 1071 CpG island CpG island 3414
Tssr103702 11 83440397 to 83440400 3 + TSS region transcription start site region 103702
Mmp28 11 83440768 to 83463040 22272 - protein coding gene matrix metallopeptidase 28 (epilysin)
Cpgi3415 11 83442537 to 83442998 461 CpG island CpG island 3415
Cpgi3416 11 83444655 to 83445321 666 CpG island CpG island 3416
Cpgi3417 11 83462413 to 83463289 876 CpG island CpG island 3417
Tssr109659 11 83462981 to 83463038 57 - TSS region transcription start site region 109659
Cpgi3418 11 83472610 to 83473808 1198 CpG island CpG island 3418
Tssr103703 11 83473079 to 83473123 44 + TSS region transcription start site region 103703
Taf15 11 83473086 to 83506743 33657 + protein coding gene TATA-box binding protein associated factor 15
Tssr103704 11 83473140 to 83473157 17 + TSS region transcription start site region 103704
Tssr103705 11 83490608 to 83490612 4 + TSS region transcription start site region 103705
Tssr103706 11 83500108 to 83500117 9 + TSS region transcription start site region 103706