Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83104439-83344491

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr109644 11 83116590 to 83116592 2 - TSS region transcription start site region 109644
Tssr103652 11 83116680 to 83116689 9 + TSS region transcription start site region 103652
Tssr103653 11 83116788 to 83116797 9 + TSS region transcription start site region 103653
Tssr103654 11 83116809 to 83116850 41 + TSS region transcription start site region 103654
Slfn1 11 83116845 to 83122659 5814 + protein coding gene schlafen 1
Tssr103655 11 83116868 to 83116882 14 + TSS region transcription start site region 103655
Tssr103656 11 83116913 to 83116918 5 + TSS region transcription start site region 103656
Tssr103657 11 83116952 to 83116968 16 + TSS region transcription start site region 103657
Tssr103658 11 83116974 to 83116999 25 + TSS region transcription start site region 103658
Tssr103659 11 83117003 to 83117021 18 + TSS region transcription start site region 103659
Tssr103660 11 83118329 to 83118358 29 + TSS region transcription start site region 103660
Tssr103661 11 83121736 to 83121745 9 + TSS region transcription start site region 103661
Tssr109645 11 83122266 to 83122268 2 - TSS region transcription start site region 109645
Tssr103662 11 83122277 to 83122289 12 + TSS region transcription start site region 103662
Gm38922 11 83123161 to 83124499 1338 + lncRNA gene predicted gene, 38922
Gm48467 11 83124820 to 83125180 360 - pseudogene predicted gene, 48467
Tssr109646 11 83126624 to 83126632 8 - TSS region transcription start site region 109646
Gm48468 11 83136724 to 83136817 93 - pseudogene predicted gene, 48468
Gm48469 11 83148412 to 83148505 93 - pseudogene predicted gene, 48469
Gm48477 11 83160079 to 83160172 93 - pseudogene predicted gene, 48477
Gm48490 11 83171749 to 83171842 93 - pseudogene predicted gene, 48490
Tssr3607 11 83175154 to 83175172 18 + TSS region transcription start site region 3607
Slfn4 11 83175186 to 83190216 15030 + protein coding gene schlafen 4
Tssr103663 11 83175189 to 83175204 15 + TSS region transcription start site region 103663
Tssr103664 11 83175245 to 83175256 11 + TSS region transcription start site region 103664
Tssr3608 11 83175263 to 83175278 15 + TSS region transcription start site region 3608
Tssr103665 11 83176048 to 83176056 8 + TSS region transcription start site region 103665
Tssr103666 11 83176254 to 83176266 12 + TSS region transcription start site region 103666
Tssr103667 11 83176674 to 83176679 5 + TSS region transcription start site region 103667
Tssr103668 11 83185376 to 83185410 34 + TSS region transcription start site region 103668
Tssr103669 11 83191296 to 83191316 20 + TSS region transcription start site region 103669
Tssr103670 11 83191326 to 83191339 13 + TSS region transcription start site region 103670
Slfn3 11 83191330 to 83215154 23824 + protein coding gene schlafen 3
Tssr103671 11 83191341 to 83191357 16 + TSS region transcription start site region 103671
Tssr109647 11 83192174 to 83192214 40 - TSS region transcription start site region 109647
Tssr103672 11 83195530 to 83195543 13 + TSS region transcription start site region 103672
Tssr103673 11 83223561 to 83223601 40 + TSS region transcription start site region 103673
AI662270 11 83223576 to 83226584 3008 + lncRNA gene expressed sequence AI662270
Tssr103674 11 83224439 to 83224491 52 + TSS region transcription start site region 103674
Tssr103675 11 83226041 to 83226070 29 + TSS region transcription start site region 103675
Tssr109648 11 83237446 to 83237450 4 - TSS region transcription start site region 109648
Tssr103676 11 83240272 to 83240296 24 + TSS region transcription start site region 103676
Gm38924 11 83244748 to 83254270 9522 - lncRNA gene predicted gene, 38924
Gm11427 11 83254267 to 83260542 6275 + pseudogene predicted gene 11427
Gm23444 11 83271498 to 83271688 190 + snRNA gene predicted gene, 23444
Slfn14 11 83275110 to 83286726 11616 - protein coding gene schlafen 14
Tssr109649 11 83286664 to 83286679 15 - TSS region transcription start site region 109649
Tssr109650 11 83286680 to 83286699 19 - TSS region transcription start site region 109650
Tssr109651 11 83286722 to 83286729 7 - TSS region transcription start site region 109651
Tssr109652 11 83286743 to 83286752 9 - TSS region transcription start site region 109652
Cpgi3408 11 83291525 to 83291931 406 CpG island CpG island 3408
Tssr103677 11 83291671 to 83291682 11 + TSS region transcription start site region 103677
Tssr103678 11 83291683 to 83291709 26 + TSS region transcription start site region 103678
AA465934 11 83291699 to 83294632 2933 + lncRNA gene expressed sequence AA465934
Tssr103679 11 83291719 to 83291748 29 + TSS region transcription start site region 103679
Tssr103680 11 83291966 to 83291967 1 + TSS region transcription start site region 103680
AI450353 11 83293430 to 83294929 1499 + lncRNA gene expressed sequence AI450353
Tssr103681 11 83293454 to 83293458 4 + TSS region transcription start site region 103681
Snord7 11 83294304 to 83294399 95 + snoRNA gene small nucleolar RNA, C/D box 7
Pex12 11 83294645 to 83298977 4332 - protein coding gene peroxisomal biogenesis factor 12
Cpgi3409 11 83298608 to 83299233 625 CpG island CpG island 3409
Tssr109653 11 83298845 to 83298870 25 - TSS region transcription start site region 109653
Tssr109654 11 83298873 to 83298905 32 - TSS region transcription start site region 109654
Tssr109655 11 83298910 to 83298983 73 - TSS region transcription start site region 109655
Tssr103682 11 83298910 to 83298925 15 + TSS region transcription start site region 103682
Tssr103683 11 83298933 to 83298958 25 + TSS region transcription start site region 103683
Tssr103684 11 83299005 to 83299046 41 + TSS region transcription start site region 103684
Ap2b1 11 83299024 to 83405035 106011 + protein coding gene adaptor-related protein complex 2, beta 1 subunit
Tssr103685 11 83299063 to 83299091 28 + TSS region transcription start site region 103685
Cpgi3410 11 83302525 to 83303283 758 CpG island CpG island 3410
Tssr109656 11 83302614 to 83302637 23 - TSS region transcription start site region 109656
Tssr103686 11 83302641 to 83302803 162 + TSS region transcription start site region 103686
Tssr103687 11 83302817 to 83302822 5 + TSS region transcription start site region 103687
Tssr103688 11 83305534 to 83305541 7 + TSS region transcription start site region 103688
Tssr103689 11 83321647 to 83321650 3 + TSS region transcription start site region 103689
D11Pas16 11 83322842 to 83322950 108 DNA segment DNA segment, Chr 11, Pasteur Institute 16