Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:82790350-83250361

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219 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lig3 11 82781109 to 82804274 23165 + protein coding gene ligase III, DNA, ATP-dependent
Rffl 11 82803819 to 82871238 67419 - protein coding gene ring finger and FYVE like domain containing protein
Tssr109579 11 82804423 to 82804428 5 - TSS region transcription start site region 109579
Tssr109580 11 82807539 to 82807542 3 - TSS region transcription start site region 109580
Tssr103583 11 82827760 to 82827766 6 + TSS region transcription start site region 103583
Tssr109581 11 82829024 to 82829042 18 - TSS region transcription start site region 109581
D11Pas73 11 82829080 to 82829190 110 DNA segment DNA segment, Chr 11, Pasteur Institute 73
Tssr103584 11 82829121 to 82829168 47 + TSS region transcription start site region 103584
29.MMHAP71FLB5.seq 11 82831021 to 82831178 157 DNA segment DNA segment, 29.MMHAP71FLB5.seq
D11Pas70 11 82832450 to 82832600 150 DNA segment DNA segment, Chr 11, Pasteur Institute 70
Tssr109582 11 82845835 to 82845856 21 - TSS region transcription start site region 109582
Tssr109583 11 82845870 to 82845900 30 - TSS region transcription start site region 109583
Tssr109584 11 82845907 to 82845923 16 - TSS region transcription start site region 109584
A130086G11Rik 11 82857876 to 82859987 2111 unclassified gene RIKEN cDNA A130086G11 gene
D11Pas74 11 82859123 to 82859266 143 DNA segment DNA segment, Chr 11, Pasteur Institute 74
Tssr109585 11 82866142 to 82866146 4 - TSS region transcription start site region 109585
Tssr109586 11 82867349 to 82867351 2 - TSS region transcription start site region 109586
Tssr103585 11 82870410 to 82870433 23 + TSS region transcription start site region 103585
Cpgi3400 11 82870566 to 82871594 1028 CpG island CpG island 3400
Tssr109587 11 82871087 to 82871098 11 - TSS region transcription start site region 109587
Tssr109588 11 82871106 to 82871121 15 - TSS region transcription start site region 109588
Tssr109589 11 82871133 to 82871183 50 - TSS region transcription start site region 109589
Rad51d 11 82876434 to 82890614 14180 - protein coding gene RAD51 paralog D
Tssr109590 11 82889986 to 82890001 15 - TSS region transcription start site region 109590
Tssr109591 11 82890021 to 82890032 11 - TSS region transcription start site region 109591
Cpgi3401 11 82890134 to 82890748 614 CpG island CpG island 3401
Tssr109592 11 82890501 to 82890534 33 - TSS region transcription start site region 109592
Tssr109593 11 82890541 to 82890626 85 - TSS region transcription start site region 109593
Tssr103586 11 82892116 to 82892128 12 + TSS region transcription start site region 103586
Tssr3604 11 82892129 to 82892135 6 + TSS region transcription start site region 3604
Fndc8 11 82892145 to 82900737 8592 + protein coding gene fibronectin type III domain containing 8
Nle1 11 82900768 to 82908411 7643 - protein coding gene notchless homolog 1
Cpgi3402 11 82907614 to 82908625 1011 CpG island CpG island 3402
Tssr109594 11 82908230 to 82908249 19 - TSS region transcription start site region 109594
Tssr109595 11 82908360 to 82908400 40 - TSS region transcription start site region 109595
Tssr109596 11 82910783 to 82910803 20 - TSS region transcription start site region 109596
Unc45b 11 82911253 to 82943406 32153 + protein coding gene unc-45 myosin chaperone B
Tssr103587 11 82911279 to 82911294 15 + TSS region transcription start site region 103587
Tssr103588 11 82911309 to 82911331 22 + TSS region transcription start site region 103588
Unc45bos 11 82924903 to 82933382 8479 - lncRNA gene unc-45 myosin chaperone B, opposite strand
Cpgi3403 11 82926025 to 82926211 186 CpG island CpG island 3403
D11Pas77 11 82928659 to 82928749 90 DNA segment DNA segment, Chr 11, Pasteur Institute 77
Cpgi3404 11 82929993 to 82932223 2230 CpG island CpG island 3404
Cpgi3405 11 82932478 to 82933782 1304 CpG island CpG island 3405
Tssr103589 11 82933484 to 82933488 4 + TSS region transcription start site region 103589
D11Pas71 11 82939605 to 82939758 153 DNA segment DNA segment, Chr 11, Pasteur Institute 71
Slfn5os 11 82942341 to 82960681 18340 - antisense lncRNA gene schlafen 5, opposite strand
Tssr103590 11 82951346 to 82951360 14 + TSS region transcription start site region 103590
Slfn5 11 82951349 to 82964840 13491 + protein coding gene schlafen 5
Tssr103591 11 82951366 to 82951393 27 + TSS region transcription start site region 103591
Tssr103592 11 82951406 to 82951448 42 + TSS region transcription start site region 103592
Cpgi3406 11 82952050 to 82952216 166 CpG island CpG island 3406
Tssr103593 11 82952062 to 82952094 32 + TSS region transcription start site region 103593
Tssr103594 11 82952095 to 82952125 30 + TSS region transcription start site region 103594
Tssr103595 11 82954556 to 82954575 19 + TSS region transcription start site region 103595
Tssr103596 11 82956593 to 82956604 11 + TSS region transcription start site region 103596
Tssr103597 11 82956894 to 82956905 11 + TSS region transcription start site region 103597
Tssr103598 11 82956945 to 82956959 14 + TSS region transcription start site region 103598
Tssr109597 11 82960648 to 82960671 23 - TSS region transcription start site region 109597
Tssr109598 11 82960673 to 82960683 10 - TSS region transcription start site region 109598
Tssr109599 11 82960693 to 82960698 5 - TSS region transcription start site region 109599
Tssr103599 11 82960895 to 82960906 11 + TSS region transcription start site region 103599
Tssr103600 11 82961260 to 82961272 12 + TSS region transcription start site region 103600
Tssr103601 11 82961517 to 82961544 27 + TSS region transcription start site region 103601
Tssr103602 11 82961700 to 82961743 43 + TSS region transcription start site region 103602
Tssr103603 11 82961835 to 82961849 14 + TSS region transcription start site region 103603
Tssr103604 11 82962112 to 82962129 17 + TSS region transcription start site region 103604
Tssr103605 11 82962320 to 82962338 18 + TSS region transcription start site region 103605
Tssr103606 11 82962641 to 82962684 43 + TSS region transcription start site region 103606
Tssr103607 11 82962773 to 82962785 12 + TSS region transcription start site region 103607
Tssr103608 11 82962869 to 82962880 11 + TSS region transcription start site region 103608
Tssr3605 11 82962984 to 82962985 1 + TSS region transcription start site region 3605
Tssr103609 11 82962991 to 82962992 1 + TSS region transcription start site region 103609
Tssr103610 11 82963070 to 82963085 15 + TSS region transcription start site region 103610
Tssr103611 11 82963270 to 82963294 24 + TSS region transcription start site region 103611
Tssr103612 11 82963306 to 82963315 9 + TSS region transcription start site region 103612
Tssr103613 11 82963446 to 82963458 12 + TSS region transcription start site region 103613
Tssr103614 11 82963567 to 82963578 11 + TSS region transcription start site region 103614
Tssr103615 11 82964086 to 82964095 9 + TSS region transcription start site region 103615
Tssr103616 11 82964519 to 82964528 9 + TSS region transcription start site region 103616
Tssr103617 11 82964560 to 82964580 20 + TSS region transcription start site region 103617
Tssr103618 11 82964588 to 82964598 10 + TSS region transcription start site region 103618
Cpgi3407 11 82970899 to 82971179 280 CpG island CpG island 3407
Gm11424 11 82971092 to 82971920 828 + pseudogene predicted gene 11424
1190001M18Rik 11 82974316 to 82975585 1269 - lincRNA gene RIKEN cDNA 1190001M18 gene
Slfn9 11 82978390 to 82991830 13440 - protein coding gene schlafen 9
Tssr109600 11 82979975 to 82979979 4 - TSS region transcription start site region 109600
D11Pas78 11 82982751 to 82983307 556 DNA segment DNA segment, Chr 11, Pasteur Institute 78
Mir7679 11 82985003 to 82985065 62 - miRNA gene microRNA 7679
Tssr109601 11 82991105 to 82991171 66 - TSS region transcription start site region 109601
Tssr109602 11 82991740 to 82991782 42 - TSS region transcription start site region 109602
Tssr109603 11 82991787 to 82991838 51 - TSS region transcription start site region 109603
Slfn8 11 83002158 to 83020810 18652 - protein coding gene schlafen 8
Tssr109604 11 83002220 to 83002236 16 - TSS region transcription start site region 109604
Tssr109605 11 83002553 to 83002564 11 - TSS region transcription start site region 109605
Tssr109606 11 83002576 to 83002593 17 - TSS region transcription start site region 109606
Tssr109607 11 83002642 to 83002686 44 - TSS region transcription start site region 109607
Tssr109608 11 83003056 to 83003076 20 - TSS region transcription start site region 109608
Tssr109609 11 83003096 to 83003109 13 - TSS region transcription start site region 109609
Tssr109610 11 83003528 to 83003548 20 - TSS region transcription start site region 109610
Tssr109611 11 83003626 to 83003639 13 - TSS region transcription start site region 109611
Tssr109612 11 83003659 to 83003676 17 - TSS region transcription start site region 109612
Tssr109613 11 83003726 to 83003737 11 - TSS region transcription start site region 109613
Tssr109614 11 83003749 to 83003760 11 - TSS region transcription start site region 109614
Tssr109615 11 83004389 to 83004402 13 - TSS region transcription start site region 109615
Tssr109616 11 83005148 to 83005173 25 - TSS region transcription start site region 109616
Tssr109617 11 83012135 to 83012147 12 - TSS region transcription start site region 109617
Tssr109618 11 83012211 to 83012289 78 - TSS region transcription start site region 109618
Tssr109619 11 83012415 to 83012426 11 - TSS region transcription start site region 109619
Tssr109620 11 83012448 to 83012465 17 - TSS region transcription start site region 109620
Tssr109621 11 83012467 to 83012479 12 - TSS region transcription start site region 109621
Tssr109622 11 83012921 to 83012930 9 - TSS region transcription start site region 109622
D11Pas14 11 83019922 to 83020603 681 DNA segment DNA segment, Chr 11, Pasteur Institute 14
Tssr109623 11 83020086 to 83020113 27 - TSS region transcription start site region 109623
Tssr109624 11 83020115 to 83020146 31 - TSS region transcription start site region 109624
Tssr109625 11 83020219 to 83020231 12 - TSS region transcription start site region 109625
Tssr109626 11 83020251 to 83020280 29 - TSS region transcription start site region 109626
Tssr109627 11 83020350 to 83020361 11 - TSS region transcription start site region 109627
Tssr109628 11 83020727 to 83020738 11 - TSS region transcription start site region 109628
Tssr109629 11 83020756 to 83020767 11 - TSS region transcription start site region 109629
Tssr109630 11 83020770 to 83020783 13 - TSS region transcription start site region 109630
Tssr109631 11 83020788 to 83020843 55 - TSS region transcription start site region 109631
Gm11425 11 83027500 to 83027997 497 - pseudogene predicted gene 11425
Slfn10-ps 11 83028130 to 83040042 11912 - pseudogene schlafen 10, pseudogene
Gm27598 11 83032632 to 83032694 62 - miRNA gene predicted gene, 27598
Gm48434 11 83036377 to 83036908 531 + pseudogene predicted gene, 48434
Tssr103619 11 83039859 to 83039874 15 + TSS region transcription start site region 103619
Tssr109632 11 83040193 to 83040219 26 - TSS region transcription start site region 109632
Tssr109633 11 83040416 to 83040432 16 - TSS region transcription start site region 109633
Tssr109634 11 83040471 to 83040480 9 - TSS region transcription start site region 109634
Tssr109635 11 83040483 to 83040518 35 - TSS region transcription start site region 109635
Tssr103620 11 83040607 to 83040612 5 + TSS region transcription start site region 103620
Tssr103621 11 83041256 to 83041288 32 + TSS region transcription start site region 103621
Tssr109636 11 83045003 to 83045029 26 - TSS region transcription start site region 109636
Tssr109637 11 83045627 to 83045645 18 - TSS region transcription start site region 109637
Tssr3606 11 83063492 to 83063526 34 + TSS region transcription start site region 3606
Tssr103622 11 83063936 to 83063978 42 + TSS region transcription start site region 103622
Tssr103623 11 83064383 to 83064409 26 + TSS region transcription start site region 103623
Tssr103624 11 83064444 to 83064455 11 + TSS region transcription start site region 103624
Tssr103625 11 83064466 to 83064471 5 + TSS region transcription start site region 103625
Tssr103626 11 83064490 to 83064498 8 + TSS region transcription start site region 103626
Tssr103627 11 83064519 to 83064540 21 + TSS region transcription start site region 103627
Tssr103628 11 83064782 to 83064802 20 + TSS region transcription start site region 103628
Tssr109638 11 83064908 to 83064920 12 - TSS region transcription start site region 109638
Tssr103629 11 83064977 to 83064984 7 + TSS region transcription start site region 103629
Tssr103630 11 83065027 to 83065032 5 + TSS region transcription start site region 103630
Tssr103631 11 83065092 to 83065109 17 + TSS region transcription start site region 103631
Slfn2 11 83065112 to 83070678 5566 + protein coding gene schlafen 2
Tssr103632 11 83065128 to 83065151 23 + TSS region transcription start site region 103632
Tssr103633 11 83065174 to 83065185 11 + TSS region transcription start site region 103633
Tssr103634 11 83065209 to 83065215 6 + TSS region transcription start site region 103634
Tssr103635 11 83065231 to 83065237 6 + TSS region transcription start site region 103635
Tssr103636 11 83065242 to 83065253 11 + TSS region transcription start site region 103636
Tssr103637 11 83065279 to 83065286 7 + TSS region transcription start site region 103637
Tssr103638 11 83065312 to 83065317 5 + TSS region transcription start site region 103638
Tssr103639 11 83065387 to 83065398 11 + TSS region transcription start site region 103639
Gm20234 11 83065741 to 83067345 1604 - antisense lncRNA gene predicted gene, 20234
Tssr103640 11 83066413 to 83066434 21 + TSS region transcription start site region 103640
Tssr103641 11 83066531 to 83066536 5 + TSS region transcription start site region 103641
Tssr109639 11 83066801 to 83066823 22 - TSS region transcription start site region 109639
Tssr109640 11 83067248 to 83067291 43 - TSS region transcription start site region 109640
D11Pas76 11 83068031 to 83068260 229 DNA segment DNA segment, Chr 11, Pasteur Institute 76
Tssr103642 11 83068398 to 83068420 22 + TSS region transcription start site region 103642
Tssr103643 11 83069278 to 83069296 18 + TSS region transcription start site region 103643
Tssr103644 11 83069327 to 83069349 22 + TSS region transcription start site region 103644
Tssr103645 11 83069508 to 83069520 12 + TSS region transcription start site region 103645
Tssr103646 11 83069577 to 83069594 17 + TSS region transcription start site region 103646
Tssr103647 11 83069746 to 83069750 4 + TSS region transcription start site region 103647
Tssr103648 11 83069816 to 83069830 14 + TSS region transcription start site region 103648
Tssr103649 11 83069861 to 83069878 17 + TSS region transcription start site region 103649
Tssr109641 11 83078158 to 83078182 24 - TSS region transcription start site region 109641
Tssr103650 11 83078332 to 83078352 20 + TSS region transcription start site region 103650
Tssr103651 11 83078354 to 83078369 15 + TSS region transcription start site region 103651
Tssr109642 11 83079866 to 83079871 5 - TSS region transcription start site region 109642
Tssr109643 11 83079884 to 83079897 13 - TSS region transcription start site region 109643
Gm48462 11 83094220 to 83098070 3850 + lincRNA gene predicted gene, 48462
Tssr109644 11 83116590 to 83116592 2 - TSS region transcription start site region 109644
Tssr103652 11 83116680 to 83116689 9 + TSS region transcription start site region 103652
Tssr103653 11 83116788 to 83116797 9 + TSS region transcription start site region 103653
Tssr103654 11 83116809 to 83116850 41 + TSS region transcription start site region 103654
Slfn1 11 83116845 to 83122659 5814 + protein coding gene schlafen 1
Tssr103655 11 83116868 to 83116882 14 + TSS region transcription start site region 103655
Tssr103656 11 83116913 to 83116918 5 + TSS region transcription start site region 103656
Tssr103657 11 83116952 to 83116968 16 + TSS region transcription start site region 103657
Tssr103658 11 83116974 to 83116999 25 + TSS region transcription start site region 103658
Tssr103659 11 83117003 to 83117021 18 + TSS region transcription start site region 103659
Tssr103660 11 83118329 to 83118358 29 + TSS region transcription start site region 103660
Tssr103661 11 83121736 to 83121745 9 + TSS region transcription start site region 103661
Tssr109645 11 83122266 to 83122268 2 - TSS region transcription start site region 109645
Tssr103662 11 83122277 to 83122289 12 + TSS region transcription start site region 103662
Gm38922 11 83123161 to 83124499 1338 + lncRNA gene predicted gene, 38922
Gm48467 11 83124820 to 83125180 360 - pseudogene predicted gene, 48467
Tssr109646 11 83126624 to 83126632 8 - TSS region transcription start site region 109646
Gm48468 11 83136724 to 83136817 93 - pseudogene predicted gene, 48468
Gm48469 11 83148412 to 83148505 93 - pseudogene predicted gene, 48469
Gm48477 11 83160079 to 83160172 93 - pseudogene predicted gene, 48477
Gm48490 11 83171749 to 83171842 93 - pseudogene predicted gene, 48490
Tssr3607 11 83175154 to 83175172 18 + TSS region transcription start site region 3607
Slfn4 11 83175186 to 83190216 15030 + protein coding gene schlafen 4
Tssr103663 11 83175189 to 83175204 15 + TSS region transcription start site region 103663